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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_1758 and Pf1N1B4_1759 are separated by 40 nucleotides
Pf1N1B4_1759 and Pf1N1B4_1760 overlap by 22 nucleotides
Pf1N1B4_1760 and Pf1N1B4_1761 overlap by 4 nucleotides
Pf1N1B4_1761 and Pf1N1B4_1762 are separated by 50 nucleotides
Pf1N1B4_1758 - Outer membrane protein assembly factor YaeT precursor, at 2,006,340 to 2,007,854
_1758
Pf1N1B4_1759 - Fibronectin type III domain protein, at 2,007,895 to 2,010,252
_1759
Pf1N1B4_1760 - Fibronectin type III domain protein, at 2,010,231 to 2,014,079
_1760
Pf1N1B4_1761 - Fibronectin type III domain protein, at 2,014,076 to 2,015,176
_1761
Pf1N1B4_1762 - FIG00957387: hypothetical protein, at 2,015,227 to 2,016,078
_1762
Group
Condition
Pf1N1B4
_1758
Pf1N1B4
_1759
Pf1N1B4
_1760
Pf1N1B4
_1761
Pf1N1B4
_1762
temperature
LB 37C
-0.2
-0.0
-0.5
-0.5
-1.0
anaerobic
Nitrate reduction
-0.1
-0.4
-0.4
-0.8
-0.2
carbon source
carbon source Sucrose 5mM
+0.0
+0.1
+0.0
-0.0
-1.6
stress
Choline Lysine 6 mM
-0.2
-0.1
-0.0
-0.1
-0.9
stress
D-Cycloserine 0.1 mg/ml
+0.1
+0.0
+0.0
-0.7
-0.7
stress
nitrate 100 mM
-0.1
-0.2
+0.2
-0.3
-0.6
stress
1-ethyl-3-methylimidazolium lysine 5 mM
-0.2
-0.1
+0.1
-0.2
-0.5
carbon source
carbon source Sucrose 5mM
-0.1
-0.5
+0.1
+0.2
-0.6
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
+0.2
-0.0
-0.5
-0.5
nitrogen source
L-Methionine (N)
+0.3
+0.0
-0.2
-0.6
-0.4
carbon source
L-Arabinose (C)
+0.1
+0.1
-0.1
+0.1
-1.0
temperature
LB 37C
-0.2
+0.1
-0.2
+0.2
-0.6
carbon source
carbon source Sucrose 0.25mM
+0.4
+0.1
+0.2
+0.2
-1.6
stress
Gentamicin 0.001 mg/ml
-0.1
-0.3
+0.2
+0.2
-0.7
carbon source
L-Arginine (C)
+0.2
+0.1
-0.0
+0.0
-0.9
stress
Sisomicin 0.001 mg/ml
+0.0
-0.1
+0.3
-0.1
-0.7
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
+0.3
-0.0
-0.2
-0.4
carbon source
D-Galactose (C)
+0.3
+0.1
-0.2
+0.0
-0.7
nitrogen source
L-Leucine (N)
+0.3
-0.1
+0.1
-0.3
-0.4
stress
copper (II) chloride 2.5 mM
+0.1
+0.0
-0.1
+0.3
-0.8
carbon source
carbon source Sucrose 0.25mM
-0.2
-0.1
+0.4
+0.4
-0.9
lb
LB
+0.3
+0.0
-0.1
+0.1
-0.7
denitrifying
Nitrate reduction, replicate C
+0.2
-0.0
+0.1
+0.3
-1.0
pH
Minimal media pH9
-0.2
-0.4
+0.4
+0.4
-0.4
stress
Choline chloride 200 mM
-0.2
-0.2
+0.3
+0.3
-0.2
denitrifying
Nitrate reduction, replicate B
+0.0
-0.1
-0.3
+0.1
+0.9
stress
Fusidic 0.125 mg/ml
+0.4
-0.0
-0.1
-0.1
+0.5
stress
benzoic 0.58 mg/ml
-0.0
+0.1
-0.2
+0.2
+0.6
stress
Cisplatin 0.006 mg/ml
+0.1
-0.0
+0.4
-0.2
+0.5
anaerobic
N2E2wt with N1B4m denitrifying repA
+0.2
+0.3
-0.1
+0.3
+0.5
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