Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1756 and Pf1N1B4_1757 overlap by 4 nucleotidesPf1N1B4_1757 and Pf1N1B4_1758 overlap by 17 nucleotidesPf1N1B4_1758 and Pf1N1B4_1759 are separated by 40 nucleotidesPf1N1B4_1759 and Pf1N1B4_1760 overlap by 22 nucleotides Pf1N1B4_1756 - Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases, at 2,004,969 to 2,005,754 _1756 Pf1N1B4_1757 - Adenylylsulfate kinase (EC 2.7.1.25), at 2,005,751 to 2,006,356 _1757 Pf1N1B4_1758 - Outer membrane protein assembly factor YaeT precursor, at 2,006,340 to 2,007,854 _1758 Pf1N1B4_1759 - Fibronectin type III domain protein, at 2,007,895 to 2,010,252 _1759 Pf1N1B4_1760 - Fibronectin type III domain protein, at 2,010,231 to 2,014,079 _1760
Group Condition Pf1N1B4_1756 Pf1N1B4_1757 Pf1N1B4_1758 Pf1N1B4_1759 Pf1N1B4_1760
carbon source carbon source Sucrose 5mM -1.6 N.D. -0.1 -0.5 +0.1
nitrogen source nitrogen source nitrite 0.1mM -1.5 N.D. -0.5 -0.0 +0.1
stress 1-ethyl-3-methylimidazolium lysine 5 mM -1.1 N.D. -0.2 -0.1 +0.1
anaerobic Nitrate reduction -0.9 N.D. +0.0 -0.2 -0.0
stress Chloride 200 mM -1.1 N.D. +0.0 +0.0 +0.1
stress Thallium(I) acetate 0.008 mg/ml -0.9 N.D. -0.0 -0.1 +0.3
stress benzoic 0.58 mg/ml -0.7 N.D. -0.0 +0.1 -0.2
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A -0.8 N.D. +0.1 +0.2 +0.0
pH Minimal media pH9 -0.3 N.D. -0.2 -0.4 +0.4
stress Thallium(I) acetate 0.008 mg/ml -0.9 N.D. +0.2 +0.1 +0.3
stress Rifampicin 0.004 mg/ml -0.7 N.D. +0.0 +0.2 +0.2
carbon source carbon source Sucrose 0.25mM -0.5 N.D. +0.4 +0.1 +0.2
carbon source carbon source Sucrose 1mM +0.8 N.D. -0.2 -0.0 -0.4
denitrifying Nitrate reduction, replicate C t3 +0.4 N.D. -0.3 +0.1 +0.2
carbon source D-Galactose (C) +0.4 N.D. +0.3 +0.1 -0.2
nitrogen source L-Leucine (N) +0.5 N.D. +0.3 -0.1 +0.1
carbon source Putrescine (C) +0.7 N.D. +0.2 +0.2 -0.2
carbon source L-Histidine (C) +0.7 N.D. +0.1 +0.2 -0.2
carbon source L-Isoleucine (C) +0.9 N.D. +0.1 +0.1 -0.1
nitrogen source L-Methionine (N) +0.8 N.D. +0.3 +0.0 -0.2
carbon source L-Lactate (C) +0.6 N.D. +0.1 -0.0 +0.2
nitrogen source L-Citrulline (N) +0.9 N.D. -0.0 +0.2 -0.1
stress Sisomicin 0.001 mg/ml +0.7 N.D. +0.0 -0.1 +0.3
nitrogen source D-Alanine (N) +0.8 N.D. +0.2 +0.1 -0.1
carbon source D-Fructose (C) +0.5 N.D. +0.1 +0.3 +0.1
carbon source casaminos (C) +0.7 N.D. +0.3 +0.2 -0.1
carbon source L-Arginine (C) +0.9 N.D. +0.2 +0.1 -0.0
carbon source pyruvate (C) +0.7 N.D. +0.2 +0.0 +0.2
carbon source Uridine (C) +0.9 N.D. +0.3 +0.1 -0.1
carbon source D-Trehalose (C) +0.8 N.D. +0.2 +0.1 +0.1
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