Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1695 and Pf1N1B4_1696 are separated by 504 nucleotidesPf1N1B4_1696 and Pf1N1B4_1697 are separated by 401 nucleotidesPf1N1B4_1697 and Pf1N1B4_1698 are separated by 38 nucleotidesPf1N1B4_1698 and Pf1N1B4_1699 overlap by 1 nucleotides Pf1N1B4_1695 - Cystine ABC transporter, ATP-binding protein, at 1,941,407 to 1,942,156 _1695 Pf1N1B4_1696 - FIG00957011: hypothetical protein, at 1,942,661 to 1,943,425 _1696 Pf1N1B4_1697 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 1,943,827 to 1,945,068 _1697 Pf1N1B4_1698 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 1,945,107 to 1,946,300 _1698 Pf1N1B4_1699 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 1,946,300 to 1,947,658 _1699
Group Condition Pf1N1B4_1695 Pf1N1B4_1696 Pf1N1B4_1697 Pf1N1B4_1698 Pf1N1B4_1699
nitrogen source nitrogen source nitrite 0.1mM -2.0 -0.1 -0.2 +0.2 -0.6
temperature LB 37C -2.5 -0.2 +0.2 +0.3 -0.3
carbon source carbon source Sucrose 5mM -1.2 -0.5 -0.7 +0.5 -0.1
stress Thallium(I) acetate 0.008 mg/ml -2.2 +0.0 +0.6 -0.2 -0.1
stress Cisplatin 0.006 mg/ml -1.4 -0.1 +0.2 -0.1 -0.2
anaerobic N2E2wt with N1B4m denitrifying repB -1.5 +0.5 -0.1 -0.1 -0.2
nitrogen source nitrogen source nitrate 20mM -1.8 +0.6 +0.2 -0.1 -0.1
stress Gentamicin 0.001 mg/ml -1.4 -0.1 +0.2 -0.0 +0.1
carbon source pyruvate (C) -1.2 -0.3 -0.1 +0.1 +0.3
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -1.0 +0.4 -0.5 -0.0 +0.3
carbon source D-Glucose (C) -1.4 +0.2 +0.2 -0.0 +0.3
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 -1.3 +0.0 +0.6 +0.3 -0.3
stress copper (II) chloride 2.5 mM -1.1 -0.1 +0.4 +0.1 +0.2
stress Doxycycline hyclate 0.0001 mg/ml +0.5 -0.5 -0.6 +0.1 +0.2
stress Chlorite 1 mM +0.2 -0.7 +0.2 +0.4 -0.4
stress Fusidic 0.125 mg/ml -0.1 -0.2 -0.8 +0.2 +0.7
lb LB -0.5 -0.3 +0.8 +0.3 -0.4
carbon source L-Arabinose (C) +0.8 -0.0 -0.4 -0.3 -0.1
carbon source carbon source Sucrose 1mM +0.7 +0.4 +0.1 +0.1 -0.6
stress Cisplatin 0.006 mg/ml -0.0 -0.5 +0.6 +0.5 +0.1
carbon source carbon source Sucrose 0.25mM +0.9 -0.2 +0.4 +0.3 -0.6
nitrogen source nitrogen source Ammonium chloride 20mM +1.0 +0.0 -0.1 +0.3 -0.2
nitrogen source nitrogen source nitrite 1mM +1.1 -0.5 +0.4 +0.3 -0.2
stress Cholin acetate 10 mM +0.9 +0.3 +0.4 -0.1 +0.1
carbon source carbon source Sucrose 0.25mM +1.0 +0.5 +0.3 -0.6 +0.3
carbon source carbon source Sucrose 0.5mM +1.1 -0.3 -0.1 +0.5 +0.3
carbon source butyrate (C) +1.0 +0.1 +0.3 +0.1 +0.1
stress Choline Lysine 6 mM +0.5 +0.1 +0.6 +0.2 +0.3
nitrogen source L-Methionine (N) +1.6 +0.4 +0.0 -0.2 +0.1
carbon source carbon source Sucrose 1mM +1.6 +0.3 +0.3 +0.6 -0.2
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