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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_1641 and Pf1N1B4_1642 are separated by 78 nucleotides
Pf1N1B4_1642 and Pf1N1B4_1643 overlap by 4 nucleotides
Pf1N1B4_1643 and Pf1N1B4_1644 are separated by 7 nucleotides
Pf1N1B4_1644 and Pf1N1B4_1645 are separated by 202 nucleotides
Pf1N1B4_1641 - Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1), at 1,884,586 to 1,885,332
_1641
Pf1N1B4_1642 - Arginine ABC transporter, permease protein ArtQ, at 1,885,411 to 1,886,106
_1642
Pf1N1B4_1643 - Amino acid ABC transporter, permease protein, at 1,886,103 to 1,886,792
_1643
Pf1N1B4_1644 - SAM-dependent methyltransferases, at 1,886,800 to 1,888,002
_1644
Pf1N1B4_1645 - hypothetical protein, at 1,888,205 to 1,888,318
_1645
Group
Condition
Pf1N1B4
_1641
Pf1N1B4
_1642
Pf1N1B4
_1643
Pf1N1B4
_1644
Pf1N1B4
_1645
carbon source
carbon source Sucrose 1mM
-1.3
-0.9
-0.7
-0.3
-0.5
stress
Fusidic 0.0625 mg/ml
-3.0
-0.3
-0.4
-0.2
+0.2
stress
Fusidic 0.125 mg/ml
-2.9
-0.6
-0.1
-0.2
+0.2
stress
Doxycycline hyclate 0.0001 mg/ml
-3.0
-0.1
-0.2
-0.2
-0.1
stress
Benzethonium chloride 0.0125 mM
-3.1
-0.0
+0.1
-0.2
+0.2
stress
Nalidixic 0.004 mg/ml
-2.8
+0.4
-0.1
-0.2
-0.1
stress
methylglyoxal 0.008 vol%
-2.9
-0.3
+0.6
-0.1
+0.2
carbon source
L-Citrulline (C)
-0.7
-0.7
-0.6
-0.3
-0.0
carbon source
carbon source Sucrose 1mM
-1.3
-0.4
-0.7
+0.3
-0.0
nitrogen source
L-Lysine (N)
-0.6
-0.6
-0.6
-0.1
-0.0
carbon source
carbon source Sucrose 0.25mM
-1.5
-1.0
-0.0
+0.1
+0.4
stress
Rifampicin 0.004 mg/ml
-2.0
-0.2
-0.0
+0.3
+0.1
carbon source
octanoate (C)
-1.0
-0.1
+0.1
-0.3
-0.0
stress
Paraquat dichloride 0.016 mg/mL
-0.5
-0.4
-0.5
+0.3
-0.2
stress
methylglyoxal 0.004 vol%
-1.6
+0.2
-0.2
+0.1
+0.2
carbon source
L-Arginine (C)
-0.2
-0.8
-0.4
+0.1
+0.1
temperature
LB 20C
-0.0
-0.4
-0.3
-0.1
-0.3
nitrogen source
L-Arginine (N)
-0.3
-0.3
-0.4
+0.1
-0.1
carbon source
carbon source Sucrose 0.25mM
-1.0
-0.3
+0.1
+0.2
+0.1
carbon source
carbon source Sucrose 0.5mM
-0.9
-0.5
-0.1
+0.4
+0.1
anaerobic
Nitrate reduction
+0.2
-0.2
-0.4
-0.3
+0.1
stress
D-Cycloserine 0.1 mg/ml
-0.5
-0.2
-0.1
+0.1
+0.3
stress
Tetracycline 0.0004 mg/ml
-1.0
+0.1
+0.1
+0.3
+0.0
pH
Minimal media pH9
+0.0
-0.8
-0.3
+0.4
+0.2
carbon source
carbon source Sucrose 5mM
-0.1
+0.2
-0.7
+0.4
-0.3
stress
Spectinomycin 0.05 mg/ml
-0.2
-0.4
-0.3
+0.1
+0.4
stress
Choline Lysine 6 mM
-0.7
+0.2
+0.2
+0.1
-0.3
pH
Minimal media pH9
+0.0
+0.2
-0.4
-0.3
+0.2
anaerobic
Nitrate reduction
+0.6
+0.1
-0.4
-0.0
-0.1
carbon source
L-Valine (C)
+0.3
+0.2
+0.5
-0.2
+0.4
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