Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1556 and Pf1N1B4_1557 are separated by 129 nucleotidesPf1N1B4_1557 and Pf1N1B4_1558 are separated by 59 nucleotidesPf1N1B4_1558 and Pf1N1B4_1559 are separated by 270 nucleotidesPf1N1B4_1559 and Pf1N1B4_1560 are separated by 10 nucleotides Pf1N1B4_1556 - Poly(3-hydroxyalkanoate) depolymerase, at 1,795,068 to 1,795,922 _1556 Pf1N1B4_1557 - Polyhydroxyalkanoic acid synthase, at 1,796,052 to 1,797,734 _1557 Pf1N1B4_1558 - Transcriptional regulator PhaD, at 1,797,794 to 1,798,414 _1558 Pf1N1B4_1559 - Polyhydroxyalkanoate granule-associated protein PhaF, at 1,798,685 to 1,799,473 _1559 Pf1N1B4_1560 - polyhydroxyalkanoate granule-associated protein PhaI, at 1,799,484 to 1,799,906 _1560
Group Condition Pf1N1B4_1556 Pf1N1B4_1557 Pf1N1B4_1558 Pf1N1B4_1559 Pf1N1B4_1560
nitrogen source nitrogen source nitrite 0.1mM -0.5 -0.1 -1.4 N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.0 -0.8 -1.0 N.D. N.D.
carbon source Carnitine Hydrochloride (C) -0.9 -0.1 -0.6 N.D. N.D.
temperature LB 37C -1.3 +0.2 -0.5 N.D. N.D.
carbon source octanoate (C) -0.1 -0.6 -0.7 N.D. N.D.
carbon source L-Lactate (C) +0.0 +0.3 -1.0 N.D. N.D.
nitrogen source nitrogen source nitrate 20mM +0.3 +0.1 -1.0 N.D. N.D.
stress methylglyoxal 0.004 vol% +0.3 +0.2 -0.8 N.D. N.D.
carbon source m-Inositol (C) -0.6 -0.2 +0.5 N.D. N.D.
denitrifying Nitrate reduction, replicate B +0.6 +0.2 -1.0 N.D. N.D.
carbon source D-Galactose (C) -0.1 +0.7 -0.8 N.D. N.D.
carbon source L-Asparagine (C) -0.7 +0.1 +0.8 N.D. N.D.
carbon source D-Ribose (C) -0.4 +0.8 -0.2 N.D. N.D.
carbon source D-Galactose (C) -0.1 +0.8 -0.4 N.D. N.D.
carbon source D-Lactate (C) +0.3 +0.7 -0.7 N.D. N.D.
stress D-Cycloserine 0.1 mg/ml -0.5 -0.1 +0.9 N.D. N.D.
carbon source carbon source Sucrose 0.25mM -0.8 +0.7 +0.5 N.D. N.D.
carbon source Cytidine (C) -0.2 +1.0 -0.1 N.D. N.D.
stress Cisplatin 0.006 mg/ml -0.4 +0.2 +0.9 N.D. N.D.
carbon source L-Arabinose (C) -0.5 +0.8 +0.4 N.D. N.D.
carbon source carbon source Sucrose 0.25mM -0.2 +0.9 +0.2 N.D. N.D.
stress Fusidic 0.0625 mg/ml -0.2 +0.2 +0.9 N.D. N.D.
carbon source D-Lactate (C) +0.6 +0.7 -0.5 N.D. N.D.
denitrifying Nitrate reduction, replicate C t3 -0.2 +0.3 +0.9 N.D. N.D.
denitrifying Nitrate reduction, replicate C t2 +0.2 +0.3 +0.9 N.D. N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.2 +0.4 +1.3 N.D. N.D.
nitrogen source D-Glucosamine Hydrochloride (N) -0.0 +1.2 +0.4 N.D. N.D.
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 +0.0 +1.1 +0.5 N.D. N.D.
carbon source carbon source Sucrose 1mM -0.6 +1.1 +1.5 N.D. N.D.
carbon source carbon source Sucrose 1mM +0.1 +0.9 +1.1 N.D. N.D.
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