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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_1424 and Pf1N1B4_1425 are separated by 300 nucleotides
Pf1N1B4_1425 and Pf1N1B4_1426 are separated by 83 nucleotides
Pf1N1B4_1426 and Pf1N1B4_1427 are separated by 267 nucleotides
Pf1N1B4_1427 and Pf1N1B4_1428 are separated by 254 nucleotides
Pf1N1B4_1424 - hypothetical protein, at 1,632,609 to 1,633,094
_1424
Pf1N1B4_1425 - hypothetical protein, at 1,633,395 to 1,634,066
_1425
Pf1N1B4_1426 - hypothetical protein, at 1,634,150 to 1,635,298
_1426
Pf1N1B4_1427 - hypothetical protein, at 1,635,566 to 1,635,835
_1427
Pf1N1B4_1428 - Flagellar motor rotation protein MotB, at 1,636,090 to 1,637,118
_1428
Group
Condition
Pf1N1B4
_1424
Pf1N1B4
_1425
Pf1N1B4
_1426
Pf1N1B4
_1427
Pf1N1B4
_1428
carbon source
carbon source Sucrose 0.5mM
-0.4
-0.1
-1.3
-0.6
-0.1
carbon source
carbon source Sucrose 1mM
-0.5
-0.6
-1.2
-0.1
+0.2
temperature
LB 10C
+0.1
-0.1
-1.6
-0.1
-0.0
carbon source
carbon source Sucrose 5mM
+0.3
-0.5
-0.0
-0.4
-1.1
temperature
LB 10C
-0.0
-0.1
-1.7
+0.3
+0.1
denitrifying
Nitrate reduction, replicate B t2
+0.3
-0.4
-0.5
-0.1
-0.6
temperature
LB 37C
+0.1
-0.2
-0.9
+0.6
-1.0
pH
Minimal media pH9
-0.3
-0.4
-0.9
+0.3
-0.1
nitrogen source
nitrogen source nitrate 20mM
+0.4
-0.3
-1.0
-0.4
+0.1
denitrifying
Nitrate reduction, replicate A
+0.1
-0.3
-0.8
+0.2
-0.2
temperature
LB 37C
-1.0
+0.2
-0.1
+0.4
-0.5
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.3
-0.2
-0.5
-0.2
+0.4
anaerobic
Nitrate reduction
-0.5
+0.0
-0.3
+0.4
-0.4
carbon source
carbon source Sucrose 0.25mM
-0.5
-0.5
-0.5
+0.2
+0.5
stress
Fusidic 0.125 mg/ml
-0.4
+0.2
+0.7
-0.3
-0.5
nitrogen source
Adenine (N)
-0.4
-0.2
+0.1
-0.3
+0.6
carbon source
carbon source Sucrose 0.25mM
+0.1
-0.5
-1.0
+0.5
+0.8
carbon source
butyrate (C)
-0.2
+0.1
+0.5
-0.5
+0.4
stress
Benzethonium chloride 0.0125 mM
+0.5
+0.1
-0.9
+0.1
+0.5
carbon source
L-Alanine (C)
+0.3
+0.2
+0.7
-0.9
+0.1
stress
D-Cycloserine 0.1 mg/ml
+0.3
+0.1
+0.4
-0.6
+0.3
nitrogen source
Ammonium chloride (N)
-0.1
-0.4
+0.7
-0.2
+0.5
carbon source
Putrescine (C)
+0.3
+0.2
+0.3
-0.4
+0.4
carbon source
D-Trehalose (C)
+0.3
+0.3
-0.1
-0.3
+0.6
nitrogen source
D-Alanine (N)
+0.1
+0.4
+0.5
-0.4
+0.4
nitrogen source
nitrogen source nitrite 0.1mM
+0.8
+0.4
+0.0
-0.4
+0.1
carbon source
L-Glutamic (C)
+0.2
+0.4
+0.5
-0.3
+0.3
carbon source
L-Valine (C)
+0.2
+0.3
+0.7
-0.3
+0.2
stress
Doxycycline hyclate 0.0001 mg/ml
+0.4
+0.6
-0.3
-0.0
+0.5
nitrogen source
L-Methionine (N)
+0.3
+0.1
+0.7
-0.1
+0.6
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