Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1419 and Pf1N1B4_1420 are separated by 182 nucleotidesPf1N1B4_1420 and Pf1N1B4_1421 are separated by 107 nucleotidesPf1N1B4_1421 and Pf1N1B4_1422 are separated by 212 nucleotidesPf1N1B4_1422 and Pf1N1B4_1423 are separated by 3 nucleotides Pf1N1B4_1419 - putative membrane protein, at 1,628,551 to 1,629,162 _1419 Pf1N1B4_1420 - 3'-to-5' oligoribonuclease (orn), at 1,629,345 to 1,629,887 _1420 Pf1N1B4_1421 - Ribosome small subunit-stimulated GTPase EngC, at 1,629,995 to 1,631,026 _1421 Pf1N1B4_1422 - hypothetical protein, at 1,631,239 to 1,631,646 _1422 Pf1N1B4_1423 - Peptidase C14, caspase catalytic subunit p20, at 1,631,650 to 1,632,609 _1423
Group Condition Pf1N1B4_1419 Pf1N1B4_1420 Pf1N1B4_1421 Pf1N1B4_1422 Pf1N1B4_1423
denitrifying Nitrate reduction, replicate B -1.1 N.D. N.D. -0.9 -0.3
denitrifying Nitrate reduction, replicate C -1.8 N.D. N.D. +0.1 -0.2
carbon source carbon source Sucrose 5mM -0.6 N.D. N.D. -1.0 -0.0
carbon source octanoate (C) +0.1 N.D. N.D. -0.9 -0.8
stress Paraquat dichloride 0.016 mg/mL -0.5 N.D. N.D. -0.7 -0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 -0.8 N.D. N.D. -0.5 -0.2
stress Aluminum chloride 2.5 mM -0.2 N.D. N.D. -0.6 -0.2
nitrogen source Cytidine (N) -0.7 N.D. N.D. +0.2 -0.1
denitrifying Nitrate reduction, replicate A -0.3 N.D. N.D. -0.6 +0.3
carbon source Glycerol (C) +0.3 N.D. N.D. -0.5 -0.4
nitrogen source nitrogen source Ammonium chloride 20mM +0.1 N.D. N.D. -1.1 +0.5
nitrogen source D-Glucosamine Hydrochloride (N) +0.3 N.D. N.D. -0.5 -0.3
stress Tetracycline 0.0004 mg/ml -0.4 N.D. N.D. +0.6 -0.6
stress Nalidixic 0.004 mg/ml -0.8 N.D. N.D. +0.7 -0.2
stress Fusidic 0.125 mg/ml +0.3 N.D. N.D. -0.7 +0.0
carbon source L-Glutamine (C) +0.3 N.D. N.D. -0.6 +0.1
carbon source pyruvate (C) +0.6 N.D. N.D. -0.6 -0.2
stress Carbenicillin 2 mg/ml -0.6 N.D. N.D. +0.5 +0.1
stress 1-ethyl-3-methylimidazolium lysine 5 mM -0.5 N.D. N.D. +0.1 +0.5
stress Chloride 300 mM +0.2 N.D. N.D. -0.5 +0.4
stress Fusidic 0.0625 mg/ml -0.5 N.D. N.D. +0.6 +0.3
temperature LB 37C +0.7 N.D. N.D. +0.4 -0.7
carbon source D,L-Lactate (C) -0.4 N.D. N.D. +0.5 +0.2
carbon source carbon source Sucrose 1mM +0.4 N.D. N.D. -0.2 +0.6
stress 1-ethyl-3-methylimidazolium chloride 80 mM +0.5 N.D. N.D. +0.3 +0.1
carbon source carbon source Sucrose 0.5mM +0.2 N.D. N.D. +0.5 +0.4
stress acetate 20 mM -0.0 N.D. N.D. +0.8 +0.4
nitrogen source L-Serine (N) +0.5 N.D. N.D. +0.2 +0.5
stress Choline Lysine 6 mM -0.0 N.D. N.D. +0.9 +0.3
carbon source carbon source Sucrose 0.25mM +0.6 N.D. N.D. +0.6 +0.5
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