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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_1395 and Pf1N1B4_1396 are separated by 214 nucleotides
Pf1N1B4_1396 and Pf1N1B4_1397 are separated by 191 nucleotides
Pf1N1B4_1397 and Pf1N1B4_1398 are separated by 123 nucleotides
Pf1N1B4_1398 and Pf1N1B4_1399 are separated by 19 nucleotides
Pf1N1B4_1395 - FIG00958717: hypothetical protein, at 1,598,047 to 1,598,967
_1395
Pf1N1B4_1396 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 1,599,182 to 1,601,485
_1396
Pf1N1B4_1397 - Replicative DNA helicase (EC 3.6.1.-), at 1,601,677 to 1,603,071
_1397
Pf1N1B4_1398 - LSU ribosomal protein L9p, at 1,603,195 to 1,603,641
_1398
Pf1N1B4_1399 - FIG003573: hypothetical protein, at 1,603,661 to 1,604,554
_1399
Group
Condition
Pf1N1B4
_1395
Pf1N1B4
_1396
Pf1N1B4
_1397
Pf1N1B4
_1398
Pf1N1B4
_1399
temperature
LB 10C
-0.3
-0.0
N.D.
N.D.
-2.3
stress
Spectinomycin 0.05 mg/ml
+0.1
+0.2
N.D.
N.D.
-3.0
stress
Spectinomycin 0.025 mg/ml
-0.0
+0.3
N.D.
N.D.
-2.5
stress
Sisomicin 0.001 mg/ml
-0.1
-0.4
N.D.
N.D.
-1.3
temperature
LB 10C
+0.0
-0.1
N.D.
N.D.
-1.8
temperature
LB 37C
-0.5
-0.3
N.D.
N.D.
-0.7
pH
Minimal media pH9
-0.3
+0.3
N.D.
N.D.
-1.5
stress
Gentamicin 0.001 mg/ml
-0.3
-0.1
N.D.
N.D.
-0.9
stress
methylglyoxal 0.008 vol%
-0.3
+0.1
N.D.
N.D.
-1.2
pH
Minimal media pH9
-0.1
-0.0
N.D.
N.D.
-1.1
carbon source
carbon source Sucrose 0.25mM
-0.7
+0.1
N.D.
N.D.
-0.6
temperature
LB 20C
-0.2
+0.1
N.D.
N.D.
-1.1
stress
Chloride 300 mM
-0.2
-0.2
N.D.
N.D.
-0.7
carbon source
carbon source Sucrose 1mM
-0.0
-0.2
N.D.
N.D.
-0.9
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
+0.1
N.D.
N.D.
-0.8
denitrifying
Nitrate reduction, replicate A t2
+0.1
-0.4
N.D.
N.D.
-0.7
denitrifying
Nitrate reduction, replicate C
-0.1
-0.6
N.D.
N.D.
-0.2
temperature
LB 30C
-0.2
-0.4
N.D.
N.D.
-0.4
stress
Choline chloride 200 mM
+0.3
-0.0
N.D.
N.D.
-1.2
stress
Cisplatin 0.006 mg/ml
-0.3
+0.0
N.D.
N.D.
-0.6
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.3
N.D.
N.D.
-1.0
temperature
LB 20C
-0.0
+0.0
N.D.
N.D.
-0.9
lb
LB
+0.2
-0.3
N.D.
N.D.
-0.6
carbon source
carbon source Sucrose 0.25mM
+0.5
-0.5
N.D.
N.D.
-0.8
stress
copper (II) chloride 2.5 mM
-0.0
+0.4
N.D.
N.D.
-0.9
stress
Tetracycline 0.0004 mg/ml
+0.2
+0.2
N.D.
N.D.
-0.8
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
+0.2
-0.5
N.D.
N.D.
+0.5
carbon source
D-Trehalose (C)
-0.4
+0.1
N.D.
N.D.
+0.6
anaerobic
N2E2wt with N1B4m denitrifying repA
+0.2
-0.1
N.D.
N.D.
+0.7
stress
Carbenicillin 2 mg/ml
-0.0
+0.3
N.D.
N.D.
+0.8
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