Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1237 and Pf1N1B4_1238 are separated by 154 nucleotidesPf1N1B4_1238 and Pf1N1B4_1239 are separated by 65 nucleotidesPf1N1B4_1239 and Pf1N1B4_1240 are separated by 139 nucleotidesPf1N1B4_1240 and Pf1N1B4_1241 are separated by 211 nucleotides Pf1N1B4_1237 - hypothetical protein, at 1,414,992 to 1,415,171 _1237 Pf1N1B4_1238 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 1,415,326 to 1,416,819 _1238 Pf1N1B4_1239 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 1,416,885 to 1,418,234 _1239 Pf1N1B4_1240 - LysR family transcriptional regulator PA0133, at 1,418,374 to 1,419,294 _1240 Pf1N1B4_1241 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 1,419,506 to 1,420,156 _1241
Group Condition Pf1N1B4_1237 Pf1N1B4_1238 Pf1N1B4_1239 Pf1N1B4_1240 Pf1N1B4_1241
carbon source Uridine (C) N.D. -0.9 -1.6 -1.3 -0.2
nitrogen source Uridine (N) N.D. -0.6 -1.6 -1.6 +0.1
carbon source Cytidine (C) N.D. -1.0 -1.0 -0.9 +0.2
nitrogen source Thymine (N) N.D. -0.3 -1.4 -0.8 -0.1
nitrogen source Cytosine (N) N.D. -0.4 -1.3 -0.7 +0.2
carbon source m-Inositol (C) N.D. -0.7 -0.6 -0.4 +0.1
carbon source a-Ketoglutaric (C) N.D. -0.7 -0.7 -0.0 +0.1
carbon source a-Ketoglutaric (C) N.D. -0.9 -0.5 +0.0 +0.1
nitrogen source Cytidine (N) N.D. -0.4 -1.4 -0.5 +1.3
anaerobic N2E2wt with N1B4m denitrifying repA N.D. -0.2 -0.6 -0.3 -0.0
carbon source D-Galacturonic Acid (C) N.D. -0.4 -0.3 -0.3 -0.0
pH Minimal media pH8 N.D. -0.1 -0.4 -0.2 -0.3
stress 1-ethyl-3-methylimidazolium chloride 80 mM N.D. -0.0 -0.4 +0.1 -0.5
carbon source L-Valine (C) N.D. -0.4 +0.1 -0.3 -0.1
nitrogen source nitrogen source nitrite 0.1mM N.D. +0.2 -0.2 +0.0 -0.6
carbon source D-Lactate (C) N.D. -0.1 -0.6 +0.2 -0.1
carbon source Tween 20 (C) N.D. -0.4 +0.2 -0.2 -0.2
carbon source pyruvate (C) N.D. -0.1 -0.6 +0.2 -0.0
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 N.D. -0.1 -0.7 +0.2 +0.1
carbon source carbon source Sucrose 0.25mM N.D. +0.4 +0.0 +0.2 -1.0
stress Carbenicillin 2 mg/ml N.D. -0.2 -0.4 +0.2 +0.2
carbon source carbon source Sucrose 5mM N.D. +0.2 -0.5 +0.2 -0.0
stress copper (II) chloride 2.5 mM N.D. +0.0 -0.2 +0.5 -0.3
carbon source carbon source Sucrose 1mM N.D. +0.0 -0.6 +0.3 +0.2
carbon source D-Ribose (C) N.D. +0.1 -0.6 +0.4 +0.2
carbon source carbon source Sucrose 0.5mM N.D. -0.3 -0.4 +0.0 +0.9
nitrogen source L-Methionine (N) N.D. -0.1 +0.3 -0.3 +0.3
nitrogen source nitrogen source nitrite 0.1mM N.D. +0.4 +0.3 -0.2 -0.3
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 N.D. -0.1 +0.5 +0.7 +0.1
temperature LB 37C N.D. +0.2 +0.6 +0.4 +0.5
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