Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_10 and Pf1N1B4_11 are separated by 280 nucleotidesPf1N1B4_11 and Pf1N1B4_12 are separated by 67 nucleotidesPf1N1B4_12 and Pf1N1B4_13 are separated by 93 nucleotidesPf1N1B4_13 and Pf1N1B4_14 are separated by 152 nucleotides Pf1N1B4_10 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 10,802 to 11,812 _10 Pf1N1B4_11 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 12,093 to 13,205 _11 Pf1N1B4_12 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 13,273 to 14,355 _12 Pf1N1B4_13 - SAM-dependent methyltransferase YafE (UbiE paralog), at 14,449 to 15,216 _13 Pf1N1B4_14 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 15,369 to 16,013 _14
Group Condition Pf1N1B4_10 Pf1N1B4_11 Pf1N1B4_12 Pf1N1B4_13 Pf1N1B4_14
carbon source carbon source Sucrose 0.25mM +0.0 N.D. -3.8 -4.2 N.D.
carbon source carbon source Sucrose 0.25mM -0.3 N.D. -3.4 -2.6 N.D.
carbon source carbon source Sucrose 0.5mM -0.3 N.D. -2.3 -2.8 N.D.
pH Minimal media pH9 -1.6 N.D. -3.0 -0.8 N.D.
pH Minimal media pH8 -0.6 N.D. -3.5 -0.8 N.D.
nitrogen source nitrogen source nitrate 5mM -0.1 N.D. -3.5 -1.0 N.D.
nitrogen source nitrogen source nitrate 5mM -0.3 N.D. -3.8 -0.4 N.D.
carbon source L-Arabinose (C) +0.1 N.D. -3.4 -1.0 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM -0.6 N.D. -3.4 -0.0 N.D.
nitrogen source L-Serine (N) -0.0 N.D. -3.2 -0.7 N.D.
carbon source D-Lactate (C) -0.1 N.D. -3.0 -0.8 N.D.
carbon source L-Arabinose (C) +0.2 N.D. -3.4 -0.7 N.D.
carbon source D-Gluconic Acid (C) -0.3 N.D. -2.5 -1.1 N.D.
pH Minimal media pH7 -0.1 N.D. -3.0 -0.8 N.D.
carbon source carbon source Sucrose 1mM +0.9 N.D. -3.2 -1.4 N.D.
nitrogen source nitrogen source nitrate 20mM +0.2 N.D. -3.6 -0.3 N.D.
pH Minimal media pH6 +0.1 N.D. -3.2 -0.5 N.D.
carbon source L-Lactate (C) +0.1 N.D. -3.0 -0.8 N.D.
nitrogen source nitrogen source Ammonium chloride 20mM +0.4 N.D. -3.1 -0.8 N.D.
carbon source a-Ketoglutaric (C) +0.5 N.D. -3.6 -0.4 N.D.
nitrogen source L-Arginine (N) +0.3 N.D. -3.2 -0.4 N.D.
carbon source a-Ketoglutaric (C) +0.3 N.D. -3.2 -0.3 N.D.
carbon source octanoate (C) -1.0 N.D. -2.6 +0.5 N.D.
carbon source D-Ribose (C) +0.6 N.D. -3.0 -0.4 N.D.
carbon source carbon source Sucrose 1mM +0.6 N.D. -2.2 -1.0 N.D.
nitrogen source nitrate (N) +1.1 N.D. -2.7 -1.0 N.D.
nitrogen source Ammonium chloride (N) +0.9 N.D. -2.7 -0.8 N.D.
carbon source m-Inositol (C) -0.5 N.D. -2.5 +0.9 N.D.
carbon source Uridine (C) -0.4 N.D. -2.5 +0.9 N.D.
nitrogen source D-Alanine (N) +0.3 N.D. -2.9 +0.6 N.D.
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