Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_114 and Pf1N1B4_115 are separated by 169 nucleotidesPf1N1B4_115 and Pf1N1B4_116 are separated by 113 nucleotidesPf1N1B4_116 and Pf1N1B4_117 are separated by 88 nucleotidesPf1N1B4_117 and Pf1N1B4_118 are separated by 40 nucleotides Pf1N1B4_114 - Diaminopimelate epimerase (EC 5.1.1.7), at 118,869 to 119,858 _114 Pf1N1B4_115 - Membrane protein mosC, at 120,028 to 121,179 _115 Pf1N1B4_116 - Iron(III) dicitrate transport protein FecA @ Iron siderophore receptor protein, at 121,293 to 123,725 _116 Pf1N1B4_117 - Iron siderophore sensor protein, at 123,814 to 124,788 _117 Pf1N1B4_118 - Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily, at 124,829 to 125,329 _118
Group Condition Pf1N1B4_114 Pf1N1B4_115 Pf1N1B4_116 Pf1N1B4_117 Pf1N1B4_118
carbon source carbon source Sucrose 0.25mM -0.6 -1.4 -0.2 -0.0 -0.7
temperature LB 37C +0.2 -0.7 -0.2 +0.2 -2.2
stress nitrate 100 mM -0.6 -1.7 -0.0 -0.4 +0.3
carbon source carbon source Sucrose 0.5mM -0.5 +0.8 -0.2 -0.2 -1.9
carbon source carbon source Sucrose 5mM -0.5 -1.2 +0.1 +0.4 -0.5
stress benzoic 0.58 mg/ml +0.8 -1.4 -0.2 -0.3 -0.6
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A -0.7 -1.4 -0.3 +0.3 +0.7
carbon source carbon source Sucrose 1mM +0.4 -2.1 -0.1 +0.5 +0.0
nitrogen source Cytidine (N) -1.5 -0.2 +0.1 +0.9 -0.5
pH Minimal media pH9 -0.8 +0.6 -0.1 -0.3 -0.4
anaerobic Nitrate reduction +0.4 -1.2 +0.1 +0.2 -0.4
carbon source octanoate (C) -0.0 -1.7 -0.0 +0.5 +0.3
denitrifying Nitrate reduction, replicate B t2 +0.5 -0.8 -0.3 +0.2 -0.3
nitrogen source Thymine (N) -1.1 -0.4 -0.1 +0.9 +0.2
anaerobic N2E2wt with N1B4m denitrifying repA -1.3 -0.2 -0.2 +0.3 +0.9
carbon source carbon source Sucrose 20mM +0.3 -1.2 -0.1 +0.1 +0.5
carbon source D-Mannose (C) +0.3 -0.8 +0.4 +0.7 -1.0
denitrifying Nitrate reduction, replicate A t2 +1.3 -0.3 -0.2 -0.8 -0.3
stress Rifampicin 0.004 mg/ml +0.2 +0.7 +0.0 -0.3 -0.9
stress Doxycycline hyclate 0.0001 mg/ml +0.7 -1.4 -0.4 +0.4 +0.4
carbon source L-Leucine (C) +0.6 -0.7 +0.0 +0.5 -0.4
stress Spectinomycin 0.025 mg/ml +0.9 -0.8 -0.0 +0.3 -0.2
denitrifying Nitrate reduction, replicate A t1 +1.2 +0.3 -0.2 -0.2 -0.6
lb LB -0.5 +0.3 +0.1 -0.3 +0.9
carbon source carbon source Sucrose 1mM -1.1 +0.4 +0.0 +0.7 +0.8
stress copper (II) chloride 2.5 mM +0.0 +0.7 +0.1 -0.7 +0.7
denitrifying Nitrate reduction, replicate C t3 +1.5 -0.5 -0.1 +0.2 -0.1
phagefrs Time6-FRS +0.7 +0.3 -0.1 +0.6 +0.6
anaerobic Nitrate reduction +0.7 +1.8 +0.2 +0.3 -0.1
carbon source carbon source Sucrose 5mM +1.1 +0.9 +0.1 +0.6 +0.9
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