Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_1077 and Pf1N1B4_1078 are separated by 43 nucleotidesPf1N1B4_1078 and Pf1N1B4_1079 overlap by 1 nucleotidesPf1N1B4_1079 and Pf1N1B4_1080 are separated by 209 nucleotidesPf1N1B4_1080 and Pf1N1B4_1081 are separated by 79 nucleotides Pf1N1B4_1077 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 1,210,133 to 1,210,705 _1077 Pf1N1B4_1078 - LptA, protein essential for LPS transport across the periplasm, at 1,210,749 to 1,211,240 _1078 Pf1N1B4_1079 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 1,211,240 to 1,211,965 _1079 Pf1N1B4_1080 - RNA polymerase sigma-54 factor RpoN, at 1,212,175 to 1,213,644 _1080 Pf1N1B4_1081 - Ribosome hibernation protein YhbH, at 1,213,724 to 1,214,032 _1081
Group Condition Pf1N1B4_1077 Pf1N1B4_1078 Pf1N1B4_1079 Pf1N1B4_1080 Pf1N1B4_1081
denitrifying Nitrate reduction, replicate C N.D. N.D. N.D. N.D. -1.6
anaerobic N2E2wt with N1B4m denitrifying repA N.D. N.D. N.D. N.D. -1.5
denitrifying Nitrate reduction, replicate A N.D. N.D. N.D. N.D. -1.2
denitrifying Nitrate reduction, replicate B N.D. N.D. N.D. N.D. -1.1
anaerobic Nitrate reduction N.D. N.D. N.D. N.D. -1.0
anaerobic Nitrate reduction N.D. N.D. N.D. N.D. -1.0
denitrifying Nitrate reduction, replicate A t1 N.D. N.D. N.D. N.D. -0.9
denitrifying Nitrate reduction, replicate A t2 N.D. N.D. N.D. N.D. -0.8
stress nitrite 10 mM N.D. N.D. N.D. N.D. -0.8
stress Doxycycline hyclate 0.0001 mg/ml N.D. N.D. N.D. N.D. -0.7
carbon source Uridine (C) N.D. N.D. N.D. N.D. -0.7
stress Benzethonium chloride 0.0125 mM N.D. N.D. N.D. N.D. -0.7
denitrifying Nitrate reduction, replicate C t2 N.D. N.D. N.D. N.D. -0.6
carbon source carbon source Sucrose 0.25mM N.D. N.D. N.D. N.D. -0.6
nitrogen source L-Valine (N) N.D. N.D. N.D. N.D. -0.6
nitrogen source L-Methionine (N) N.D. N.D. N.D. N.D. -0.6
carbon source Glycerol (C) N.D. N.D. N.D. N.D. -0.6
anaerobic N2E2wt with N1B4m denitrifying repA N.D. N.D. N.D. N.D. -0.6
carbon source D-Ribose (C) N.D. N.D. N.D. N.D. -0.5
denitrifying Nitrate reduction, replicate C t3 N.D. N.D. N.D. N.D. -0.5
carbon source L-Glutamic (C) N.D. N.D. N.D. N.D. -0.5
denitrifying Nitrate reduction, replicate B t2 N.D. N.D. N.D. N.D. -0.5
anaerobic Nitrate reduction N.D. N.D. N.D. N.D. -0.5
carbon source m-Inositol (C) N.D. N.D. N.D. N.D. -0.5
stress Bacitracin 2 mg/ml N.D. N.D. N.D. N.D. -0.5
carbon source D-Galactose (C) N.D. N.D. N.D. N.D. +0.5
carbon source L-Arabinose (C) N.D. N.D. N.D. N.D. +0.5
nitrogen source D-Glucosamine Hydrochloride (N) N.D. N.D. N.D. N.D. +0.5
carbon source carbon source Sucrose 0.5mM N.D. N.D. N.D. N.D. +0.5
stress Paraquat dichloride 0.016 mg/mL N.D. N.D. N.D. N.D. +0.9
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