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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_998 and Pf1N1B4_999 are separated by 25 nucleotides
Pf1N1B4_999 and Pf1N1B4_1000 overlap by 11 nucleotides
Pf1N1B4_1000 and Pf1N1B4_1001 are separated by 56 nucleotides
Pf1N1B4_1001 and Pf1N1B4_1002 are separated by 286 nucleotides
Pf1N1B4_998 - Membrane fusion component of tripartite multidrug resistance system, at 1,131,976 to 1,132,839
_998
Pf1N1B4_999 - Na+-dependent transporters of the SNF family, at 1,132,865 to 1,133,065
_999
Pf1N1B4_1000 - Inner membrane component of tripartite multidrug resistance system, at 1,133,055 to 1,135,343
_1000
Pf1N1B4_1001 - Outer membrane component of tripartite multidrug resistance system, at 1,135,400 to 1,136,899
_1001
Pf1N1B4_1002 - LysR family transcriptional regulator QseA, at 1,137,186 to 1,138,154
_1002
Group
Condition
Pf1N1B4
_998
Pf1N1B4
_999
Pf1N1B4
_1000
Pf1N1B4
_1001
Pf1N1B4
_1002
stress
Cholin acetate 20 mM
-0.9
-0.5
-0.6
-0.7
+0.1
temperature
LB 37C
-1.3
-0.2
+0.2
-0.1
-0.2
anaerobic
Nitrate reduction
-0.3
-0.5
-0.2
-0.2
-0.2
carbon source
carbon source Sucrose 1mM
-0.8
+0.0
-0.2
+0.2
-0.3
anaerobic
Nitrate reduction
-0.4
-0.5
-0.1
+0.2
-0.3
carbon source
carbon source Sucrose 0.25mM
-0.5
+0.7
-0.4
+0.4
-0.6
stress
copper (II) chloride 2.5 mM
+0.2
+0.0
-0.1
-0.8
+0.2
pH
Minimal media pH6
-0.6
+0.4
+0.0
+0.1
-0.3
carbon source
carbon source Sucrose 0.25mM
-0.5
+0.5
+0.3
-0.1
-0.4
stress
1-ethyl-3-methylimidazolium chloride 80 mM
-0.4
+0.5
-0.0
+0.2
-0.5
stress
nitrite 10 mM
-0.1
+0.4
+0.1
-0.2
-0.5
stress
nitrite 10 mM
+0.3
+0.6
+0.0
+0.2
-1.3
stress
nitrate 100 mM
-0.2
+0.3
+0.1
+0.2
-0.5
carbon source
octanoate (C)
+0.2
-0.1
-0.2
-0.5
+0.6
carbon source
L-Alanine (C)
+0.3
-0.5
+0.2
+0.2
+0.1
carbon source
L-Malic (C)
+0.5
-0.5
+0.0
+0.1
+0.1
stress
Aluminum chloride 2.5 mM
+0.9
+0.0
-0.0
-0.1
-0.4
lb
LB
+0.6
+0.1
+0.2
-0.4
+0.0
stress
Fusidic 0.0625 mg/ml
+0.3
-0.0
+0.3
+0.3
-0.4
stress
Cisplatin 0.006 mg/ml
-0.1
+0.6
+0.1
+0.5
-0.3
carbon source
L-Leucine (C)
+0.9
-0.3
+0.1
-0.0
+0.2
stress
benzoic 0.58 mg/ml
+0.6
+0.2
+0.1
+0.3
-0.2
nitrogen source
L-Methionine (N)
+0.7
-0.5
+0.1
+0.6
+0.0
stress
Dimethyl Sulfoxide 5 vol%
+0.9
-0.1
+0.2
+0.2
-0.0
carbon source
carbon source Sucrose 5mM
+0.6
+0.4
+0.3
+0.1
-0.1
nitrogen source
L-Leucine (N)
+0.9
+0.1
+0.1
+0.2
-0.0
stress
Fusidic 0.125 mg/ml
+0.7
-0.0
-0.0
+0.4
+0.3
carbon source
butyrate (C)
+1.9
+1.4
+1.4
+1.2
+1.6
carbon source
acetate (C)
+1.9
+1.4
+1.8
+1.8
+1.3
carbon source
acetate (C)
+2.1
+1.5
+1.8
+1.9
+1.3
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