Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28280 and PFLU_RS28285 are separated by 200 nucleotidesPFLU_RS28285 and PFLU_RS31840 are separated by 301 nucleotidesPFLU_RS31840 and PFLU_RS28290 are separated by 44 nucleotidesPFLU_RS28290 and PFLU_RS28295 overlap by 8 nucleotides PFLU_RS28280: PFLU_RS28280 - hypothetical protein, at 6,293,934 to 6,297,431 _RS28280 PFLU_RS28285: PFLU_RS28285 - hypothetical protein, at 6,297,632 to 6,297,871 _RS28285 PFLU_RS31840: PFLU_RS31840 - hypothetical protein, at 6,298,173 to 6,298,376 _RS31840 PFLU_RS28290: PFLU_RS28290 - chemotaxis protein CheW, at 6,298,421 to 6,298,876 _RS28290 PFLU_RS28295: PFLU_RS28295 - response regulator, at 6,298,869 to 6,304,688 _RS28295
Group Condition PFLU_RS28280 PFLU_RS28285 PFLU_RS31840 PFLU_RS28290 PFLU_RS28295
carbon source Phloretic Acid 2 mM (C) +0.3 -0.4 -3.6 -1.9 -1.2
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.4 -3.9 -0.1 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 -0.4 -4.4 -0.0 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.2 -4.1 -0.4 -0.4
carbon source D-Galactose (C) -0.0 -0.3 -3.7 -0.2 -0.3
carbon source Phloretic Acid 2 mM (C) +0.1 -2.5 +0.2 -1.2 -1.0
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.2 -3.1 -0.5 -0.7
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.4 -1.8 -0.8 -1.1
carbon source NAG (C) +0.1 -3.1 -0.1 -0.5 -0.3
carbon source Xanthosine (C) +0.1 -0.3 -3.6 -0.1 -0.0
temperature Growth at 25C; with MOPS -0.1 +0.1 -3.3 -0.4 -0.1
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride +0.0 -0.6 -2.6 -0.3 -0.3
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.9 -2.4 +0.3 -0.9
carbon source acetate 30 mM (C) +0.1 -1.5 -0.8 -0.9 -0.5
nitrogen source nitrate (N); with MOPS +0.0 -0.3 -3.4 +0.2 -0.2
carbon source propionate 20 mM (C) +0.0 +0.4 -2.4 -0.9 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -1.5 +0.3 -1.2 -1.1
carbon source Shikimic Acid (C) +0.1 +0.8 -3.6 -0.0 -0.2
carbon source Phloretic Acid 2 mM (C) -0.0 +1.0 -0.3 -1.9 -1.4
stress Betaine (C)(N); with TAPS; with chloride -0.1 -0.2 -3.2 +0.8 +0.5
carbon source L-Ornithine 10 mM (C) -0.1 -1.3 +1.1 -0.6 -1.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -1.9 -2.4 +1.2 +1.1
carbon source L-Valine 10 mM (C) +0.0 +2.1 -3.1 -0.4 -0.1
stress Betaine (C)(N); with TAPS; with chloride -0.1 +1.0 -2.7 +0.7 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.0 +1.5 -1.7 -0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +1.1 -1.8 +0.4 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -1.7 -0.4 +1.4 +1.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.3 -1.6 +1.2 +1.0
carbon source 4-Aminobutyric (C) -0.0 -1.5 +0.9 +1.3 +1.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.5 -1.4 +1.5 +1.1
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