Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS13270 and PFLU_RS13275 are separated by 73 nucleotidesPFLU_RS13275 and PFLU_RS31595 are separated by 120 nucleotidesPFLU_RS31595 and PFLU_RS13280 are separated by 217 nucleotidesPFLU_RS13280 and PFLU_RS13285 are separated by 6 nucleotides PFLU_RS13270: PFLU_RS13270 - AraC family transcriptional regulator, at 2,999,829 to 3,000,668 _RS13270 PFLU_RS13275: PFLU_RS13275 - DUF1345 domain-containing protein, at 3,000,742 to 3,001,383 _RS13275 PFLU_RS31595: PFLU_RS31595 - hypothetical protein, at 3,001,504 to 3,001,773 _RS31595 PFLU_RS13280: PFLU_RS13280 - multidrug efflux RND transporter permease subunit, at 3,001,991 to 3,005,083 _RS13280 PFLU_RS13285: PFLU_RS13285 - efflux RND transporter periplasmic adaptor subunit, at 3,005,090 to 3,006,232 _RS13285
Group Condition PFLU_RS13270 PFLU_RS13275 PFLU_RS31595 PFLU_RS13280 PFLU_RS13285
pH Growth at pH9 and (C) D-Glucose -0.6 -0.2 -2.0 -0.4 -1.4
carbon source Xanthosine (C) +0.1 -0.7 -2.4 -0.5 +0.0
carbon source L-Isoleucine (C) -0.2 -0.2 -1.9 -0.3 -0.3
carbon source L-Lysine (C) -0.4 -0.1 -0.1 -0.5 -1.6
carbon source Inosine (C) -0.5 -0.4 -0.3 -0.8 -0.5
carbon source Phloretic Acid 2 mM (C) +0.2 +0.2 -0.1 -0.3 -2.3
nitrogen source nitrate (N); with MOPS -0.6 -0.6 -1.4 -0.2 +0.4
carbon source Inosine (C) -0.6 -0.6 -0.8 -0.4 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -0.3 -0.8 -0.6 -0.7
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.7 +0.3 -0.6 -0.9
stress Betaine (C)(N); with TAPS; with chloride -0.5 +0.3 -0.5 +0.3 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.7 -0.7 -0.4 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.2 -1.4 -0.1 +0.7
no stress control Glucose (C) and L-Glutamine (N); with MOPS +0.1 +0.6 -1.1 -0.2 +0.5
carbon source Shikimic Acid (C) -0.5 -0.3 +1.4 -0.1 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -0.4 +1.5 +0.1 -0.7
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 +0.3 +1.1 -0.4 -0.8
carbon source D,L-Malic Acid (C) -0.1 -0.9 +0.9 +0.2 +0.4
carbon source L-Valine (C) +0.5 -0.8 +0.9 -0.3 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -0.5 -0.3 +0.5 +1.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -1.0 -0.9 +0.4 +2.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 -0.5 +0.5 +0.5 +0.9
carbon source p-Coumaric (C) 5 mM -0.1 -0.2 -0.2 +0.9 +1.1
carbon source p-Coumaric (C) 5 mM +0.3 +0.1 -0.5 +1.0 +0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.2 +0.1 +1.1 +1.0
carbon source p-Coumaric (C) 5 mM +0.2 +0.1 -0.0 +1.2 +0.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +0.0 +0.3 +1.2 +0.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 -0.3 +0.5 +1.3 +0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.0 +0.3 +0.7 +0.8 +1.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.1 +1.0 +1.4 +1.3
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