Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS09130 and PFLU_RS09135 are separated by 36 nucleotidesPFLU_RS09135 and PFLU_RS31490 are separated by 991 nucleotidesPFLU_RS31490 and PFLU_RS09140 are separated by 13 nucleotidesPFLU_RS09140 and PFLU_RS09145 are separated by 359 nucleotides PFLU_RS09130: PFLU_RS09130 - methyl-accepting chemotaxis protein, at 2,023,434 to 2,025,401 _RS09130 PFLU_RS09135: PFLU_RS09135 - alpha/beta fold hydrolase, at 2,025,438 to 2,026,250 _RS09135 PFLU_RS31490: PFLU_RS31490 - hypothetical protein, at 2,027,242 to 2,027,509 _RS31490 PFLU_RS09140: PFLU_RS09140 - hypothetical protein, at 2,027,523 to 2,028,293 _RS09140 PFLU_RS09145: PFLU_RS09145 - tRNA-Glu, at 2,028,653 to 2,028,728 _RS09145
Group Condition PFLU_RS09130 PFLU_RS09135 PFLU_RS31490 PFLU_RS09140 PFLU_RS09145
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.3 -3.4 -0.6 N.D.
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.2 -0.0 -3.5 -0.1 N.D.
carbon source Shikimic Acid 10 mM (C) +0.0 -0.1 -3.3 -0.3 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.1 -3.6 -0.1 N.D.
no stress control Glucose (C) and L-Glutamine (N); with MOPS +0.1 -0.1 -3.5 -0.2 N.D.
no stress control L-Glutamine (C)(N); with MOPS +0.1 -0.0 -3.5 -0.1 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -0.0 -3.3 -0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -0.6 -2.9 -0.2 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.0 -0.2 -2.9 -0.4 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.0 -3.1 +0.2 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.6 -2.6 -0.2 N.D.
pH Growth at pH9 and (C) Trisodium citrate -0.0 +0.1 -2.7 -0.2 N.D.
no stress control Glucose (C) and nitrate (N); with MOPS -0.2 +0.3 -2.6 -0.2 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 -0.2 -3.2 +0.3 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +0.1 -2.8 -0.1 N.D.
nitrogen source Ammonium chloride (N) +0.2 -0.2 -2.7 -0.0 N.D.
carbon source NAG (C) -0.0 -0.1 -2.7 +0.2 N.D.
no stress control Glucose (C) and L-Glutamine (N); with TAPS -0.1 +0.1 -2.8 +0.2 N.D.
stress L-Glutamine (C)(N); with MOPS; with chloride +0.2 +0.3 -3.0 -0.1 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.0 -3.3 +0.2 N.D.
carbon source L-Valine (C) -0.1 -0.4 -2.6 +0.4 N.D.
carbon source Arabitol 10 mM (C) +0.3 +0.1 -2.8 -0.1 N.D.
temperature shift Temperature shift 30_to_25 +0.3 +0.1 -2.9 +0.0 N.D.
carbon source butyrate (C) +0.1 +0.3 -2.7 -0.1 N.D.
carbon source p-Coumaric (C) 5 mM +0.2 +0.2 -2.1 -0.5 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -0.7 -1.8 +0.0 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.3 -2.6 +0.3 N.D.
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS +0.5 +0.5 -2.5 -0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -0.4 +2.1 +0.2 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.0 +0.0 +3.9 -0.7 N.D.
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