Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS30465 and PFLU_RS07305 are separated by 191 nucleotidesPFLU_RS07305 and PFLU_RS31445 are separated by 24 nucleotidesPFLU_RS31445 and PFLU_RS07310 are separated by 168 nucleotidesPFLU_RS07310 and PFLU_RS07315 are separated by 144 nucleotides PFLU_RS30465: PFLU_RS30465 - hypothetical protein, at 1,625,367 to 1,625,877 _RS30465 PFLU_RS07305: PFLU_RS07305 - colicin transporter, at 1,626,069 to 1,627,358 _RS07305 PFLU_RS31445: PFLU_RS31445 - colicin immunity protein, at 1,627,383 to 1,627,694 _RS31445 PFLU_RS07310: PFLU_RS07310 - hypothetical protein, at 1,627,863 to 1,628,042 _RS07310 PFLU_RS07315: PFLU_RS07315 - MFS transporter, at 1,628,187 to 1,629,413 _RS07315
Group Condition PFLU_RS30465 PFLU_RS07305 PFLU_RS31445 PFLU_RS07310 PFLU_RS07315
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 +0.1 -2.7 -0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.2 +0.1 -3.0 +0.0 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 -0.4 -2.2 -0.9 +0.1
stress Betaine (C)(N); with TAPS; with chloride +0.2 +0.0 -2.5 -0.5 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.1 -0.3 -1.7 -0.2 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +0.0 -2.1 +0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 -0.5 -0.9 -0.8 +0.3
no stress control Growth with no stress; with MOPS -0.3 -0.2 -1.7 +0.0 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 -0.0 -2.1 +0.2 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 +0.3 -1.8 -0.2 -0.1
nitrogen source nitrate (N); with MOPS -0.5 +0.1 -1.2 -0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +0.0 -2.2 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 +0.1 -1.8 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 +0.4 -1.5 -0.5 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.0 -1.9 +0.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.2 +0.1 -1.9 +0.1 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 +0.1 -1.6 +0.3 +0.1
carbon source Shikimic Acid (C) -0.3 +0.0 -1.3 +0.5 -0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.2 +0.0 -2.0 +0.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +0.3 -1.0 -0.8 +0.0
no stress control Glycine betaine (C)(N); with MOPS -0.0 +0.3 -1.6 +0.3 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 +0.3 -1.4 -0.5 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 +0.6 -1.2 -0.4 -0.1
carbon source Phloretic Acid 2 mM (C) -0.1 +0.1 -1.9 +0.7 +0.4
no stress control L-Glutamine (C)(N); with MOPS +0.5 +0.3 -1.5 +0.0 -0.1
carbon source L-Carnitine (C) +0.4 -0.3 -1.0 +0.4 +0.1
pH Growth at pH9 and (C) D-Glucose +0.2 -0.1 +0.8 -1.2 +0.4
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.5 +0.3 -1.0 +0.1 +0.2
carbon source L-Valine (C) +0.8 -0.8 +0.7 +0.5 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 +0.4 +1.4 -0.1 -0.1
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