Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS14860 and PFLU_RS14865 are separated by 99 nucleotidesPFLU_RS14865 and PFLU_RS30825 are separated by 1088 nucleotidesPFLU_RS30825 and PFLU_RS14875 are separated by 1302 nucleotidesPFLU_RS14875 and PFLU_RS14880 are separated by 479 nucleotides PFLU_RS14860: PFLU_RS14860 - helix-turn-helix transcriptional regulator, at 3,325,757 to 3,326,116 _RS14860 PFLU_RS14865: PFLU_RS14865 - glucose 1-dehydrogenase, at 3,326,216 to 3,326,965 _RS14865 PFLU_RS30825: PFLU_RS30825 - hypothetical protein, at 3,328,054 to 3,328,371 _RS30825 PFLU_RS14875: PFLU_RS14875 - hypothetical protein, at 3,329,674 to 3,329,961 _RS14875 PFLU_RS14880: PFLU_RS14880 - hypothetical protein, at 3,330,441 to 3,331,367 _RS14880
Group Condition PFLU_RS14860 PFLU_RS14865 PFLU_RS30825 PFLU_RS14875 PFLU_RS14880
nitrogen source NAG (N); with MOPS -0.5 +0.1 -1.6 -0.1 -1.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -0.5 -1.0 -0.3 -0.9
carbon source D-Ribose (C) -0.5 -0.3 -0.3 +0.2 -1.9
pH Growth at pH8 and (C) D-Glucose -0.3 -0.3 -0.4 -0.7 -1.1
stress Betaine (C)(N); with MOPS; with chloride -0.0 +0.2 -1.6 -0.3 -0.7
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -0.3 +0.1 -0.7 -0.2 -1.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 -0.7 -0.7 +0.3 -0.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.1 +0.2 +0.3 -0.1 -2.1
pH Growth at pH7 and (C) D-Glucose +0.3 +0.4 -0.2 -1.4 -0.5
carbon source Shikimic Acid (C) -1.0 +0.3 +0.9 -0.9 -0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 +0.1 -1.4 +0.6 -0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 -0.0 +0.1 -1.8 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.1 +0.1 +0.0 -1.7 +0.5
carbon source p-Coumaric (C) 5 mM +0.5 -0.5 +0.3 -0.9 -0.3
carbon source L-Isoleucine (C) -0.3 +0.4 +0.6 -0.7 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 -0.6 -1.0 +0.5 +0.2
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) +0.2 +0.4 -1.8 +0.7 -0.0
pH Growth at pH6 and (C) D-Glucose -0.4 +0.3 -1.0 +0.6 +0.3
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.5 -0.4 +0.7 -0.1 -0.9
carbon source Shikimic Acid (C) -0.3 +0.3 +0.8 +0.1 -0.9
carbon source L-Arabinose (C); with MOPS -0.1 +0.6 -0.1 +0.8 -0.9
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.2 -0.2 +1.3 -0.3
carbon source L-Carnitine (C) +0.7 -0.5 -0.2 +1.5 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 +0.4 +0.7 +0.9 -0.3
carbon source L-Valine (C) +0.5 +0.6 +0.2 +0.8 -0.4
carbon source Inosine (C) +0.1 +0.7 +0.3 +0.9 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 +0.5 -0.1 +0.6 +1.1
nitrogen source nitrate (N); with MOPS +0.2 +0.5 +0.9 +0.7 -0.3
carbon source 4-Aminobutyric (C) +0.2 +0.4 +1.6 +0.6 -0.2
carbon source L-Valine (C) +0.3 +0.9 +0.3 +1.1 +0.4
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