Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS30765 and PFLU_RS12775 are separated by 288 nucleotidesPFLU_RS12775 and PFLU_RS30770 overlap by 14 nucleotidesPFLU_RS30770 and PFLU_RS12780 are separated by 73 nucleotidesPFLU_RS12780 and PFLU_RS12785 are separated by 333 nucleotides PFLU_RS30765: PFLU_RS30765 - DAK2 domain-containing protein, at 2,881,916 to 2,882,026 _RS30765 PFLU_RS12775: PFLU_RS12775 - TerC family protein, at 2,882,315 to 2,883,883 _RS12775 PFLU_RS30770: PFLU_RS30770 - thioredoxin family protein, at 2,883,870 to 2,884,196 _RS30770 PFLU_RS12780: PFLU_RS12780 - hypothetical protein, at 2,884,270 to 2,884,518 _RS12780 PFLU_RS12785: PFLU_RS12785 - transporter substrate-binding domain-containing protein, at 2,884,852 to 2,885,700 _RS12785
Group Condition PFLU_RS30765 PFLU_RS12775 PFLU_RS30770 PFLU_RS12780 PFLU_RS12785
carbon source D-(+)-Galactosamine 10 mM (C) N.D. +0.2 -1.3 -0.4 -3.4
carbon source D-(+)-Galactosamine (C) N.D. +0.2 -0.0 -0.2 -3.9
carbon source D-(+)-Galactosamine 10 mM (C) N.D. -0.1 -0.3 -0.1 -3.1
carbon source D-(+)-Galactosamine 10 mM (C) N.D. -0.0 -0.2 -0.4 -3.0
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.0 -2.4 -0.6 -0.5
carbon source Phloretic Acid 2 mM (C) N.D. -0.4 -2.4 -0.3 -0.3
carbon source D-Glucosamine Hydrochloride 10 mM (C) N.D. -0.1 -0.9 -0.5 -1.9
carbon source D-(+)-Galactosamine (C) N.D. +0.2 -0.6 -0.2 -2.4
carbon source D-(+)-Galactosamine (C) N.D. +0.1 -0.5 -0.4 -1.9
carbon source D-Glucosamine Hydrochloride 10 mM (C) N.D. -0.8 +0.3 -0.8 -1.2
carbon source L-Carnitine (C) N.D. -0.2 -2.4 -0.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.3 -2.3 -0.1 +0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.3 -1.9 -0.2 -0.1
carbon source L-Carnitine (C) N.D. +0.6 -1.5 -0.6 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.7 -1.1 +0.9 -0.1
carbon source p-Coumaric 2 mM (C) N.D. -0.6 +0.9 -0.8 -0.5
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS N.D. -0.5 -0.3 -0.6 +1.0
carbon source NAG (C) N.D. +0.5 +0.4 +0.1 -1.4
carbon source pyruvate 20 mM (C) N.D. -1.1 +0.8 +0.3 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.0 +0.5 +0.6 -1.4
carbon source 4-Guanidinobutyric (C) N.D. +0.3 +1.1 -0.3 -1.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.0 -1.0 +0.9 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.7 +0.9 -0.3 -0.9
pH Growth at pH7 and (C) D-Glucose N.D. -0.8 +1.0 +0.4 +0.2
carbon source Xanthosine (C) N.D. +0.7 +0.9 -0.7 +0.4
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.6 +1.0 +0.4 -0.6
carbon source 4-Aminobutyric (C) N.D. -0.3 +1.0 +0.3 +0.6
carbon and nitrogen source NAG carbon and (N) N.D. -0.4 +1.5 +0.5 +0.2
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.8 +1.8 +0.4 +0.7
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.7 +1.3 +0.2 -0.1
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