Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS12200 and PFLU_RS12205 are separated by 171 nucleotidesPFLU_RS12205 and PFLU_RS30720 are separated by 116 nucleotidesPFLU_RS30720 and PFLU_RS12210 are separated by 329 nucleotidesPFLU_RS12210 and PFLU_RS12215 are separated by 144 nucleotides PFLU_RS12200: PFLU_RS12200 - methyl-accepting chemotaxis protein, at 2,707,331 to 2,707,756 _RS12200 PFLU_RS12205: PFLU_RS12205 - DNA binding protein, at 2,707,928 to 2,708,293 _RS12205 PFLU_RS30720: PFLU_RS30720 - helix-turn-helix domain-containing protein, at 2,708,410 to 2,709,372 _RS30720 PFLU_RS12210: PFLU_RS12210 - hypothetical protein, at 2,709,702 to 2,710,160 _RS12210 PFLU_RS12215: PFLU_RS12215 - methyl-accepting chemotaxis protein, at 2,710,305 to 2,711,933 _RS12215
Group Condition PFLU_RS12200 PFLU_RS12205 PFLU_RS30720 PFLU_RS12210 PFLU_RS12215
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.2 -1.3 -0.6 -1.1 -1.2
carbon source propionate 20 mM (C) +0.5 -3.2 -0.4 -0.7 -0.5
nitrogen source Ammonium chloride (N); with MOPS -0.2 -1.6 -0.1 -1.1 -0.3
stress L-Glutamine (C)(N); with TAPS; with chloride -0.5 -1.6 -0.3 -0.7 -0.1
carbon source caffeic 2 mM (C) -1.4 -0.3 +0.1 -1.3 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 -0.8 +0.0 -2.3 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 +0.0 -0.0 -2.4 -0.9
stress Betaine (C)(N); with TAPS; with chloride +0.7 -1.6 +0.0 -1.2 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +1.2 -0.8 -2.9 +0.3
stress L-Glutamine (C)(N); with MOPS; with chloride +0.3 -2.3 -0.1 -0.5 +0.3
stress Betaine (C)(N); with TAPS; with chloride +0.6 -1.9 -0.2 -0.3 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +1.0 -0.3 -1.5 -0.7
stress L-Glutamine (C)(N); with MOPS; with chloride +0.4 +0.8 -0.0 -2.8 +0.0
carbon source L-Ornithine 10 mM (C) +0.5 +0.3 -0.3 -1.8 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.4 +0.7 -0.3 -1.0 -0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.8 +0.2 -0.3 -2.2 -0.0
pH Growth at pH8 and (C) Trisodium citrate -1.3 +1.3 -0.4 -0.3 -0.7
pH Growth at pH7 and (C) D-Glucose -0.7 +1.1 -0.2 -1.2 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -2.2 -0.2 +0.5 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.6 +1.1 -0.2 -1.3 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 +0.9 -0.2 -1.7 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +1.3 -0.0 -1.3 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +1.1 +0.3 -1.6 -0.1
carbon source Quinic Acid (C) -0.6 +1.0 -0.3 +1.1 -0.7
temperature shift Temperature shift 10_to_30; with MOPS -0.2 +0.4 +0.1 +2.6 +0.0
nitrogen source no extra (N); with MOPS +0.1 +0.2 +0.2 +2.4 +0.3
temperature shift Temperature shift 10_to_30 -0.3 -0.0 +0.8 +3.5 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.7 +1.0 +0.7 +1.0 +0.5
temperature shift Temperature shift 10_to_30 -0.1 -0.0 +0.8 +3.6 -0.2
temperature shift Temperature shift 10_to_30 -0.0 +0.1 +0.7 +3.3 -0.1
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