Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS09870 and PFLU_RS09875 are separated by 133 nucleotidesPFLU_RS09875 and PFLU_RS30590 are separated by 168 nucleotidesPFLU_RS30590 and PFLU_RS09880 are separated by 360 nucleotidesPFLU_RS09880 and PFLU_RS30595 are separated by 2 nucleotides PFLU_RS09870: PFLU_RS09870 - hypothetical protein, at 2,172,420 to 2,173,601 _RS09870 PFLU_RS09875: PFLU_RS09875 - PAS domain-containing protein, at 2,173,735 to 2,175,039 _RS09875 PFLU_RS30590: PFLU_RS30590 - hypothetical protein, at 2,175,208 to 2,175,414 _RS30590 PFLU_RS09880: PFLU_RS09880 - short-chain fatty acid transporter, at 2,175,775 to 2,176,017 _RS09880 PFLU_RS30595: PFLU_RS30595 - group II intron reverse transcriptase/maturase, at 2,176,020 to 2,176,163 _RS30595
Group Condition PFLU_RS09870 PFLU_RS09875 PFLU_RS30590 PFLU_RS09880 PFLU_RS30595
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 -0.2 -4.9 +0.2 -0.5
stress Betaine (C)(N); with TAPS; with chloride -0.0 -0.3 -3.5 -0.1 -1.0
carbon source p-Coumaric (C) 5 mM -0.1 -0.2 -4.0 +0.2 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 -0.1 -4.7 +0.3 +0.1
carbon source Choline chloride 10 mM (C) -0.1 -0.2 -3.5 -0.4 -0.2
carbon source Xanthosine (C) -0.2 +0.2 -5.5 +0.9 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.0 -3.6 -0.1 -0.2
stress Betaine (C)(N); with TAPS; with chloride -0.2 -0.3 -1.9 -0.4 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.1 -0.1 -2.5 -0.6 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.0 -0.0 -1.9 -0.3 -1.0
carbon source L-Valine (C) +0.0 -0.2 -2.6 -0.3 -0.0
carbon source L-Valine 10 mM (C) +0.1 -0.3 -2.6 -0.2 -0.1
stress L-Glutamine (C)(N); with TAPS; with chloride -0.1 +0.1 -3.1 -0.1 +0.2
stress L-Glutamine (C)(N); with MOPS; with chloride +0.1 +0.3 -2.9 -0.4 -0.2
pH Growth at pH8 and (C) D-Glucose -0.0 +0.1 -2.5 +0.1 -0.7
carbon source Glycerol (C) +0.0 -0.2 -2.3 -0.2 -0.3
carbon source acetate (C) -0.0 -0.0 -2.6 +0.1 -0.1
no stress control L-Glutamine (C)(N); with MOPS +0.1 +0.1 -2.7 +0.1 -0.2
carbon source propionate 20 mM (C) -0.2 -0.1 -1.6 +0.2 -0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.3 -2.5 -0.3 +0.3
no stress control L-Glutamine (C)(N); with MOPS +0.1 +0.0 -2.6 -0.1 +0.2
carbon source Cytidine (C) -0.1 +0.1 -2.2 +0.3 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG +0.7 +0.1 -2.6 +0.2 +0.4
stress Betaine (C)(N); with TAPS; with chloride -0.2 -0.2 +1.1 -0.4 -1.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.0 -0.0 -1.7 +0.8 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG +1.0 +0.0 -1.8 -0.0 +0.1
stress malate (C) and Ammonium chloride (N); with MOPS; with PEG +1.8 +0.0 -1.9 -0.1 -0.3
stress Betaine (C)(N); with MOPS; with chloride -0.0 -0.4 +1.3 -0.6 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 -0.1 +1.6 -0.4 -1.0
stress malate (C) and Ammonium chloride (N); with MOPS; with PEG +1.7 +0.0 -0.9 +0.1 -0.0
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