Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29965 and PFLU_RS29970 are separated by 127 nucleotidesPFLU_RS29970 and PFLU_RS29975 overlap by 4 nucleotidesPFLU_RS29975 and PFLU_RS29980 overlap by 1 nucleotidesPFLU_RS29980 and PFLU_RS29985 are separated by 11 nucleotides PFLU_RS29965: PFLU_RS29965 - N-acetylmuramoyl-L-alanine amidase, at 6,664,545 to 6,665,747 _RS29965 PFLU_RS29970: PFLU_RS29970 - GTP cyclohydrolase I FolE2, at 6,665,875 to 6,666,771 _RS29970 PFLU_RS29975: PFLU_RS29975 - ATP-binding cassette domain-containing protein, at 6,666,768 to 6,667,436 _RS29975 PFLU_RS29980: PFLU_RS29980 - metal ABC transporter permease, at 6,667,436 to 6,668,302 _RS29980 PFLU_RS29985: PFLU_RS29985 - metal ABC transporter substrate-binding protein, at 6,668,314 to 6,669,192 _RS29985
Group Condition PFLU_RS29965 PFLU_RS29970 PFLU_RS29975 PFLU_RS29980 PFLU_RS29985
carbon source L-Ornithine 10 mM (C) -0.7 -0.0 -2.1 -1.2 -0.3
carbon source 4-Aminobutyric (C) +0.2 -0.1 -5.2 +0.2 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 +0.0 -1.0 -2.0 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.3 -2.4 -1.4 -0.6
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.7 -0.3 -1.6 -0.8 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.1 -1.4 -1.2 -0.6
nitrogen source Ammonium chloride (N); with MOPS -0.1 -0.2 -2.4 -0.3 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 -0.0 -2.0 -0.4 -0.2
carbon source Ferulic Acid 2 mM (C) -0.3 -0.1 -2.4 -0.0 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -0.2 -2.7 -0.2 -0.1
pH Growth at pH8 and (C) Trisodium citrate -0.3 -0.2 -1.9 +0.1 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.2 -0.1 -1.9 -0.5 -0.3
carbon source Inosine (C) +0.0 -0.4 -2.5 +0.7 -0.4
carbon source NAG (C) +0.3 -0.2 -2.0 +0.3 -0.4
stress Betaine (C)(N); with TAPS; with chloride +0.4 +0.6 -1.4 -0.5 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.1 -1.6 +0.6 +0.5
pH Growth at pH9 and (C) Trisodium citrate -0.7 -0.1 +1.5 -0.5 -0.5
stress Betaine (C)(N); with MOPS; with chloride +0.4 -0.1 +1.4 -0.8 -0.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +0.0 +1.0 -1.0 -0.3
carbon source Citraconic 20 mM (C) +0.2 +0.4 +0.3 +1.2 +0.9
no stress control Glucose (C) and L-Glutamine (N); with TAPS +0.1 +0.6 +1.0 +0.5 +0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 +0.5 +1.0 +1.0 +0.5
carbon source Citraconic 20 mM (C) +0.6 +0.3 +0.3 +1.4 +0.8
carbon source Ferulic Acid (C) 1.5 mM +0.2 +0.2 +0.7 +1.5 +0.9
carbon source Ferulic Acid (C) 1.5 mM +0.7 +0.3 -0.7 +2.1 +1.2
carbon source Citraconic 20 mM (C) +0.3 +0.5 +0.7 +1.6 +1.1
carbon source p-Coumaric (C) 5 mM +1.1 +1.2 +0.7 +3.7 +2.6
carbon source p-Coumaric (C) 5 mM +1.3 +1.2 +0.8 +3.8 +2.7
carbon source p-Coumaric (C) 5 mM +1.3 +1.4 +0.6 +4.1 +2.8
carbon source p-Coumaric (C) 5 mM +1.2 +1.4 +0.8 +4.1 +2.8
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