Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29925 and PFLU_RS29930 are separated by 81 nucleotidesPFLU_RS29930 and PFLU_RS29935 are separated by 117 nucleotidesPFLU_RS29935 and PFLU_RS29940 overlap by 7 nucleotidesPFLU_RS29940 and PFLU_RS29945 are separated by 44 nucleotides PFLU_RS29925: PFLU_RS29925 - hypothetical protein, at 6,658,272 to 6,659,300 _RS29925 PFLU_RS29930: PFLU_RS29930 - pyridoxal kinase PdxY, at 6,659,382 to 6,660,254 _RS29930 PFLU_RS29935: PFLU_RS29935 - DUF3301 domain-containing protein, at 6,660,372 to 6,660,767 _RS29935 PFLU_RS29940: PFLU_RS29940 - cobalamin biosynthesis protein CobW, at 6,660,761 to 6,661,723 _RS29940 PFLU_RS29945: PFLU_RS29945 - DUF1826 domain-containing protein, at 6,661,768 to 6,662,412 _RS29945
Group Condition PFLU_RS29925 PFLU_RS29930 PFLU_RS29935 PFLU_RS29940 PFLU_RS29945
carbon source 4-Guanidinobutyric (C) -0.3 -0.3 -0.2 -1.2 -0.8
no stress control L-Glutamine (C)(N); with MOPS -0.3 -0.2 -0.3 -0.8 -1.2
pH Growth at pH9 and (C) Trisodium citrate +0.0 -0.2 -0.1 -1.1 -1.0
stress Betaine (C)(N); with MOPS; with chloride -0.1 +0.5 +0.1 -1.5 -1.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.3 -2.0 -0.3 -0.5
nitrogen source nitrate (N); with MOPS +0.1 -0.2 +0.0 -0.3 -1.3
carbon source L-Arabinose (C); with MOPS +0.1 +0.2 -0.2 -1.8 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.4 -1.5 -0.7 -0.0
carbon source p-Coumaric 2 mM (C) +0.1 -0.4 -0.3 -1.2 +0.2
pH Growth at pH9 and (C) Trisodium citrate +0.0 -1.3 -0.4 -0.4 +0.3
carbon source D,L-Malic Acid (C) -0.2 -0.2 +0.4 -0.9 -0.7
nitrogen source NAG (N); with MOPS +0.1 -0.5 +0.2 -0.9 -0.3
carbon source L-Carnitine (C) -0.2 +0.3 -0.6 -0.9 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -0.4 +0.1 -1.3 +0.5
carbon source Phloretic Acid 2 mM (C) -0.1 +0.4 -0.0 -0.7 -0.8
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.3 -0.6 -0.7 +0.2
carbon source L-Arabinose (C) -0.0 -0.6 -0.1 -0.7 +0.3
carbon source Phloretic Acid 2 mM (C) +0.2 +0.3 -0.2 -1.2 -0.1
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -0.1 -0.1 -0.1 -1.1 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.0 +1.0 -1.1 +0.8 -1.5
carbon source 4-Hydroxybenzoic Acid 2 mM (C) +0.2 +0.1 -0.6 -0.6 +0.6
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.4 +0.2 +0.5 -0.8
stress Betaine (C)(N); with TAPS; with chloride -0.1 -0.2 +0.7 +0.4 -1.0
stress Betaine (C)(N); with TAPS; with chloride +0.1 -0.5 +0.7 +0.0 -0.6
pH Growth at pH8 and (C) Trisodium citrate +0.2 -0.3 -0.4 +0.1 +0.8
carbon source NAG (C) +0.1 -0.7 +0.5 +0.5 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.1 -0.3 +0.6 +0.8
carbon source p-Coumaric 2 mM (C) -0.0 -0.3 -0.3 +1.1 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 -0.5 +0.1 +1.1 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 +0.3 -0.2 +0.7 +0.7
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