Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29635 and PFLU_RS29640 are separated by 104 nucleotidesPFLU_RS29640 and PFLU_RS29645 are separated by 93 nucleotidesPFLU_RS29645 and PFLU_RS29650 overlap by 4 nucleotidesPFLU_RS29650 and PFLU_RS29655 overlap by 37 nucleotides PFLU_RS29635: PFLU_RS29635 - type VI secretion system contractile sheath large subunit, at 6,580,522 to 6,582,021 _RS29635 PFLU_RS29640: PFLU_RS29640 - type VI secretion system tube protein Hcp, at 6,582,126 to 6,582,614 _RS29640 PFLU_RS29645: PFLU_RS29645 - type VI secretion system baseplate subunit TssE, at 6,582,708 to 6,583,223 _RS29645 PFLU_RS29650: PFLU_RS29650 - type VI secretion system baseplate subunit TssF, at 6,583,220 to 6,585,079 _RS29650 PFLU_RS29655: PFLU_RS29655 - type VI secretion system baseplate subunit TssG, at 6,585,043 to 6,586,086 _RS29655
Group Condition PFLU_RS29635 PFLU_RS29640 PFLU_RS29645 PFLU_RS29650 PFLU_RS29655
carbon source p-Coumaric 2 mM (C) +0.0 -0.7 -0.2 -0.6 -0.3
stress Sucrose (C) and Glycine betaine (N); with TAPS -0.2 -0.5 -0.8 -0.1 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.0 -0.5 -1.0 +0.0 -0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.0 -1.0 -0.4 -0.3 +0.1
no stress control Glycine betaine (C)(N); with TAPS +0.3 -0.3 -0.6 -0.4 -0.2
carbon source L-Valine (C) +0.2 -0.3 -0.7 -0.2 -0.2
carbon source Xanthosine (C) -0.2 -0.7 -0.6 +0.3 -0.0
carbon source Inosine (C) -0.3 -0.4 -0.3 +0.3 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.9 -0.3 +0.2 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 +0.2 -1.1 +0.0 -0.2
carbon source L-Carnitine (C) +0.1 +0.3 -0.9 -0.0 -0.2
carbon source 4-Aminobutyric (C) -0.5 -0.3 +0.3 -0.3 +0.1
carbon source NAG (C) +0.4 -0.5 -0.6 +0.0 +0.0
nitrogen source NAG (N); with MOPS +0.1 -1.0 +0.0 +0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -1.0 -0.5 +0.1 +0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 +0.3 -1.3 +0.4 +0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 -0.8 +0.2 +0.4 -0.1
nitrogen source nitrate (N); with MOPS +0.1 +0.5 -1.0 -0.0 +0.1
carbon source Shikimic Acid (C) +0.3 +0.2 -0.6 +0.4 -0.2
pH Growth at pH9 and (C) Trisodium citrate +0.2 +0.5 -0.7 -0.0 +0.3
nitrogen source nitrate (N) +0.3 -0.3 +0.6 -0.3 -0.1
pH Growth at pH8 and (C) Trisodium citrate -0.0 +1.1 -0.6 +0.2 -0.3
carbon source 4-Aminobutyric (C) -0.4 +0.4 +0.4 +0.2 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 -0.4 +0.5 +0.2 +0.0
stress Betaine (C)(N); with TAPS; with chloride -0.2 +0.6 +0.1 +0.4 +0.2
carbon source Quinic Acid (C) +0.4 -0.2 +0.7 +0.3 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.2 +0.5 +0.3 +0.5 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 +0.5 +0.6 +0.0 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.0 +0.4 +0.4 +0.4
stress Betaine (C)(N); with TAPS; with chloride +0.1 +0.9 +0.0 +0.1 +0.6
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