Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29620 and PFLU_RS29625 are separated by 392 nucleotidesPFLU_RS29625 and PFLU_RS29630 are separated by 54 nucleotidesPFLU_RS29630 and PFLU_RS29635 are separated by 2 nucleotidesPFLU_RS29635 and PFLU_RS29640 are separated by 104 nucleotides PFLU_RS29620: PFLU_RS29620 - type VI secretion system-associated FHA domain protein TagH, at 6,577,209 to 6,578,546 _RS29620 PFLU_RS29625: PFLU_RS29625 - type VI secretion system protein TssA, at 6,578,939 to 6,579,958 _RS29625 PFLU_RS29630: PFLU_RS29630 - type VI secretion system contractile sheath small subunit, at 6,580,013 to 6,580,519 _RS29630 PFLU_RS29635: PFLU_RS29635 - type VI secretion system contractile sheath large subunit, at 6,580,522 to 6,582,021 _RS29635 PFLU_RS29640: PFLU_RS29640 - type VI secretion system tube protein Hcp, at 6,582,126 to 6,582,614 _RS29640
Group Condition PFLU_RS29620 PFLU_RS29625 PFLU_RS29630 PFLU_RS29635 PFLU_RS29640
stress Betaine (C)(N); with MOPS; with chloride -0.3 -0.8 +0.0 +0.2 -0.9
carbon source Glycerol (C) 20 mM -0.2 -0.3 -0.3 -0.2 -0.6
carbon source L-Glutamic (C) 10 mM +0.1 -0.2 -0.5 -0.3 -0.4
carbon source 4-Aminobutyric (C) -0.5 +0.1 -0.0 -0.5 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.5 +0.5 -0.4 -0.1 -0.8
carbon source L-Glutamine (C) 10 mM +0.2 -0.2 -0.3 -0.3 -0.6
carbon source L-Carnitine (C) -1.0 +0.3 -0.2 -0.2 -0.1
carbon source caffeic 2 mM (C) -0.6 -0.2 -0.2 -0.2 +0.2
carbon source L-Proline (C) 10 mM +0.3 -0.3 -0.3 -0.1 -0.6
carbon source 4-Aminobutyric (C) -0.3 -0.3 -0.4 -0.4 +0.4
carbon source Sucrose 5 mM (C) -0.6 +0.3 -0.6 -0.2 +0.1
carbon source L-Valine 10 mM (C) -0.8 -0.1 +0.4 +0.1 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.2 -0.5 +0.3 -1.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.1 +0.4 -0.6 +0.1 -0.3
pH Growth at pH6 and (C) D-Glucose -0.6 -0.0 -0.4 -0.0 +0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.4 +0.3 -0.6 +0.2 +0.2
carbon source Xanthosine (C) -0.1 +0.3 -0.4 -0.3 +0.4
carbon source Inosine (C) -0.1 +0.1 +0.6 -0.3 -0.4
stress Betaine (C)(N); with TAPS; with chloride +0.6 -0.4 -0.4 -0.1 +0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.5 -0.4 +0.2 -0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.6 +0.0 +0.4 +0.0 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 -0.3 +0.5 +0.5 -0.4
no stress control L-Glutamine (C)(N); with MOPS +0.1 -0.1 +0.2 -0.2 +0.9
pH Growth at pH8 and (C) Trisodium citrate -0.4 -0.0 +0.5 -0.0 +1.1
nitrogen source nitrate (N); with MOPS +0.4 -0.2 +0.3 +0.1 +0.5
pH Growth at pH9 and (C) Trisodium citrate +0.6 +0.1 +0.4 -0.2 +0.2
carbon source NAG (C) +0.4 +0.0 +1.0 +0.4 -0.5
carbon and nitrogen source NAG carbon and (N) +0.6 +0.0 +0.6 -0.0 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 +0.3 +0.1 +0.1 +0.5
carbon source 4-Guanidinobutyric (C) +0.8 +0.2 +0.5 +0.2 +0.3
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