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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens SBW25-INTG
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
PFLU_RS29620 and PFLU_RS29625 are separated by 392 nucleotides
PFLU_RS29625 and PFLU_RS29630 are separated by 54 nucleotides
PFLU_RS29630 and PFLU_RS29635 are separated by 2 nucleotides
PFLU_RS29635 and PFLU_RS29640 are separated by 104 nucleotides
PFLU_RS29620: PFLU_RS29620 - type VI secretion system-associated FHA domain protein TagH, at 6,577,209 to 6,578,546
_RS29620
PFLU_RS29625: PFLU_RS29625 - type VI secretion system protein TssA, at 6,578,939 to 6,579,958
_RS29625
PFLU_RS29630: PFLU_RS29630 - type VI secretion system contractile sheath small subunit, at 6,580,013 to 6,580,519
_RS29630
PFLU_RS29635: PFLU_RS29635 - type VI secretion system contractile sheath large subunit, at 6,580,522 to 6,582,021
_RS29635
PFLU_RS29640: PFLU_RS29640 - type VI secretion system tube protein Hcp, at 6,582,126 to 6,582,614
_RS29640
Group
Condition
PFLU
_RS29620
PFLU
_RS29625
PFLU
_RS29630
PFLU
_RS29635
PFLU
_RS29640
stress
Betaine (C)(N); with MOPS; with chloride
-0.3
-0.8
+0.0
+0.2
-0.9
carbon source
Glycerol (C) 20 mM
-0.2
-0.3
-0.3
-0.2
-0.6
carbon source
L-Glutamic (C) 10 mM
+0.1
-0.2
-0.5
-0.3
-0.4
carbon source
4-Aminobutyric (C)
-0.5
+0.1
-0.0
-0.5
-0.3
carbon source
2-Deoxy-D-Ribose 10 mM (C)
-0.5
+0.5
-0.4
-0.1
-0.8
carbon source
L-Glutamine (C) 10 mM
+0.2
-0.2
-0.3
-0.3
-0.6
carbon source
L-Carnitine (C)
-1.0
+0.3
-0.2
-0.2
-0.1
carbon source
caffeic 2 mM (C)
-0.6
-0.2
-0.2
-0.2
+0.2
carbon source
L-Proline (C) 10 mM
+0.3
-0.3
-0.3
-0.1
-0.6
carbon source
4-Aminobutyric (C)
-0.3
-0.3
-0.4
-0.4
+0.4
carbon source
Sucrose 5 mM (C)
-0.6
+0.3
-0.6
-0.2
+0.1
carbon source
L-Valine 10 mM (C)
-0.8
-0.1
+0.4
+0.1
-0.4
stress
D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride
+0.3
+0.2
-0.5
+0.3
-1.0
soil
Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
+0.1
+0.4
-0.6
+0.1
-0.3
pH
Growth at pH6 and (C) D-Glucose
-0.6
-0.0
-0.4
-0.0
+0.5
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
-0.4
+0.3
-0.6
+0.2
+0.2
carbon source
Xanthosine (C)
-0.1
+0.3
-0.4
-0.3
+0.4
carbon source
Inosine (C)
-0.1
+0.1
+0.6
-0.3
-0.4
stress
Betaine (C)(N); with TAPS; with chloride
+0.6
-0.4
-0.4
-0.1
+0.3
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
+0.5
-0.4
+0.2
-0.5
no stress control
p-Coumaric (C) and Ammonium chloride (N); with MOPS
+0.6
+0.0
+0.4
+0.0
-0.5
stress
p-Coumaric (C) and Ammonium chloride (N); with TAPS
+0.2
-0.3
+0.5
+0.5
-0.4
no stress control
L-Glutamine (C)(N); with MOPS
+0.1
-0.1
+0.2
-0.2
+0.9
pH
Growth at pH8 and (C) Trisodium citrate
-0.4
-0.0
+0.5
-0.0
+1.1
nitrogen source
nitrate (N); with MOPS
+0.4
-0.2
+0.3
+0.1
+0.5
pH
Growth at pH9 and (C) Trisodium citrate
+0.6
+0.1
+0.4
-0.2
+0.2
carbon source
NAG (C)
+0.4
+0.0
+1.0
+0.4
-0.5
carbon and nitrogen source
NAG carbon and (N)
+0.6
+0.0
+0.6
-0.0
+0.2
stress
Glucose (C) and Ammonium chloride (N); with MOPS; with chloride
+0.6
+0.3
+0.1
+0.1
+0.5
carbon source
4-Guanidinobutyric (C)
+0.8
+0.2
+0.5
+0.2
+0.3
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