Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29550 and PFLU_RS29555 are separated by 77 nucleotidesPFLU_RS29555 and PFLU_RS29560 are separated by 108 nucleotidesPFLU_RS29560 and PFLU_RS29565 are separated by 124 nucleotidesPFLU_RS29565 and PFLU_RS29570 are separated by 84 nucleotides PFLU_RS29550: PFLU_RS29550 - ATP-dependent DNA helicase RecG, at 6,557,377 to 6,559,452 _RS29550 PFLU_RS29555: PFLU_RS29555 - HDOD domain-containing protein, at 6,559,530 to 6,560,930 _RS29555 PFLU_RS29560: PFLU_RS29560 - hypothetical protein, at 6,561,039 to 6,561,413 _RS29560 PFLU_RS29565: PFLU_RS29565 - glycine zipper 2TM domain-containing protein, at 6,561,538 to 6,562,464 _RS29565 PFLU_RS29570: PFLU_RS29570 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 6,562,549 to 6,564,273 _RS29570
Group Condition PFLU_RS29550 PFLU_RS29555 PFLU_RS29560 PFLU_RS29565 PFLU_RS29570
carbon source L-Arabinose (C); with MOPS -2.2 -1.2 -2.8 +0.2 -0.1
carbon source Xanthosine (C) -2.2 -0.8 -3.0 +0.1 -0.1
carbon and nitrogen source NAG carbon and (N); with MOPS -1.8 -1.6 -2.4 +0.2 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.3 -0.6 -4.0 +0.4 -0.2
carbon source L-Arabinose (C); with MOPS -1.9 -1.3 -2.1 +0.0 -0.0
stress Betaine (C)(N); with MOPS; with chloride -1.1 +0.1 -4.2 -0.2 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.9 -0.3 -3.8 -0.1 -0.1
carbon source Xanthosine (C) -2.7 -0.6 -1.7 -0.0 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.8 -0.2 -2.8 -0.2 -0.0
stress Betaine (C)(N); with MOPS; with chloride -1.3 -0.9 -2.8 +0.1 -0.0
pH Growth at pH7 and (C) D-Glucose -0.6 -0.5 -3.6 -0.2 +0.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.2 -1.3 -2.4 +0.3 -0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS -1.2 +0.2 -3.6 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.6 +0.6 -3.6 -0.1 +0.1
temperature Growth at 25C; with MOPS -1.5 -0.6 -2.5 +0.2 -0.3
nitrogen source NAG (N); with MOPS -1.3 -0.7 -2.4 +0.1 -0.2
nitrogen source nitrite (N) -1.8 -1.2 -1.3 +0.2 -0.1
stress Betaine (C)(N); with TAPS; with chloride -1.7 +1.0 -1.9 -0.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.6 +1.0 -1.5 +0.0 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.7 +2.6 -4.1 +0.0 -0.2
carbon source Phloretic Acid 2 mM (C) -1.0 -2.4 +1.1 +0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.8 +2.6 -1.3 +0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.9 +2.6 -1.0 -0.0 -0.0
carbon source Inosine (C) -0.8 -1.4 +2.4 -0.4 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.7 +2.7 -0.3 -0.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.8 +2.8 -0.6 -0.0 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.3 +1.7 +1.6 -0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.7 +2.3 +0.8 +0.2 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.1 +2.5 +1.0 +0.1 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.1 +2.7 +1.7 -0.3 -0.2
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