Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29400 and PFLU_RS29405 are separated by 166 nucleotidesPFLU_RS29405 and PFLU_RS29410 are separated by 62 nucleotidesPFLU_RS29410 and PFLU_RS29415 are separated by 35 nucleotidesPFLU_RS29415 and PFLU_RS29420 are separated by 180 nucleotides PFLU_RS29400: PFLU_RS29400 - DUF1127 domain-containing protein, at 6,530,099 to 6,530,323 _RS29400 PFLU_RS29405: PFLU_RS29405 - PLP-dependent aminotransferase family protein, at 6,530,490 to 6,531,914 _RS29405 PFLU_RS29410: PFLU_RS29410 - phospholipase D family protein, at 6,531,977 to 6,533,542 _RS29410 PFLU_RS29415: PFLU_RS29415 - MFS transporter, at 6,533,578 to 6,534,720 _RS29415 PFLU_RS29420: PFLU_RS29420 - aldehyde dehydrogenase, at 6,534,901 to 6,536,394 _RS29420
Group Condition PFLU_RS29400 PFLU_RS29405 PFLU_RS29410 PFLU_RS29415 PFLU_RS29420
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -3.2 -0.1 -0.1 -0.1 -2.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -5.3 -0.1 -0.3 +0.2 +0.4
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -4.5 -0.3 +0.0 -0.1 -0.3
pH Growth at pH8 and (C) D-Glucose -4.8 +0.1 -0.1 -0.2 -0.0
stress Betaine (C)(N); with TAPS; with chloride -3.7 +0.2 -0.1 +0.2 -1.5
pH Growth at pH9 and (C) Trisodium citrate -3.9 +0.0 -0.2 +0.3 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -3.2 +0.1 -0.1 +0.1 -1.5
stress Betaine (C)(N); with MOPS; with chloride -2.5 -0.1 -0.2 -0.1 -1.4
stress Betaine (C)(N); with TAPS; with chloride -2.6 +0.2 +0.0 -0.1 -1.6
stress Betaine (C)(N); with MOPS; with chloride -2.3 +0.0 +0.2 -0.2 -1.7
no stress control Glycine betaine (C)(N); with TAPS -3.4 -0.1 -0.0 -0.1 -0.3
stress Betaine (C)(N); with MOPS; with chloride -1.0 -0.3 -0.1 -0.0 -2.4
carbon source Ferulic Acid 2 mM (C) -2.4 -0.1 +0.0 -0.2 -1.2
carbon source Phloretic Acid 2 mM (C) -1.8 +0.3 -0.1 -0.7 -1.4
temperature shift Temperature shift 30_to_25; with MOPS -3.4 -0.2 +0.1 +0.1 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -3.2 +0.0 -0.1 +0.0 -0.3
stress Betaine (C)(N); with MOPS; with chloride -1.0 +0.1 +0.2 -0.2 -2.4
stress Betaine (C)(N); with MOPS; with chloride -1.3 -0.1 -0.1 +0.3 -2.2
carbon source L-Hydroxyproline (C) -3.2 +0.0 +0.1 +0.0 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -2.8 -0.0 -0.2 +0.2 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.0 +0.1 -0.3 +0.3 -1.0
pH Growth at pH8 and (C) Trisodium citrate -2.1 +0.1 +0.4 -0.2 -1.0
carbon source caffeic 2 mM (C) -2.2 +0.1 +0.3 +0.0 -1.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 -0.0 +0.1 +0.2 -2.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.7 +0.1 -0.2 +0.3 -2.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +1.5 +0.3 -0.1 -0.1 -2.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.4 +0.1 -0.2 -0.1 -1.9
stress Betaine (C)(N); with TAPS; with chloride +1.4 +0.1 -0.0 -0.1 -1.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.7 +0.1 +0.1 -0.2 -1.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.9 +0.1 +0.2 +0.2 -1.5
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