Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS29305 and PFLU_RS29310 are separated by 420 nucleotidesPFLU_RS29310 and PFLU_RS29315 are separated by 6 nucleotidesPFLU_RS29315 and PFLU_RS29320 are separated by 93 nucleotidesPFLU_RS29320 and PFLU_RS29325 are separated by 71 nucleotides PFLU_RS29305: PFLU_RS29305 - P-II family nitrogen regulator, at 6,509,024 to 6,509,362 _RS29305 PFLU_RS29310: PFLU_RS29310 - accessory factor UbiK family protein, at 6,509,783 to 6,510,043 _RS29310 PFLU_RS29315: PFLU_RS29315 - hypothetical protein, at 6,510,050 to 6,510,513 _RS29315 PFLU_RS29320: PFLU_RS29320 - YifB family Mg chelatase-like AAA ATPase, at 6,510,607 to 6,512,103 _RS29320 PFLU_RS29325: PFLU_RS29325 - methyl-accepting chemotaxis protein, at 6,512,175 to 6,514,151 _RS29325
Group Condition PFLU_RS29305 PFLU_RS29310 PFLU_RS29315 PFLU_RS29320 PFLU_RS29325
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -1.7 -3.5 -0.1 +0.0
carbon source Xanthosine (C) N.D. -2.2 -2.2 -0.1 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -2.6 -1.8 -0.1 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -3.1 -1.2 +0.1 -0.2
stress Betaine (C)(N); with TAPS; with chloride N.D. -2.8 -1.2 -0.2 -0.0
carbon source Xanthosine (C) N.D. -2.2 -1.9 +0.3 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -2.6 -1.1 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -3.3 -0.4 +0.2 -0.2
carbon source D-(+)-Galactosamine (C) N.D. -2.5 -1.0 -0.0 -0.1
carbon source 4-Aminobutyric (C) N.D. -2.3 -1.2 -0.2 +0.1
carbon source p-Coumaric 2 mM (C) N.D. -2.4 -0.5 -0.4 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -2.6 -0.6 -0.0 -0.2
no stress control Glucose (C) and L-Glutamine (N); with TAPS N.D. -2.6 -0.7 -0.0 -0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -2.8 -0.3 -0.2 -0.1
temperature Growth at 25C; with MOPS N.D. -3.1 -0.0 -0.1 +0.0
no stress control Glycine betaine (C)(N); with TAPS N.D. -2.7 -0.7 -0.0 +0.1
temperature Growth at 30C N.D. -3.1 -0.1 +0.2 -0.0
temperature shift Temperature shift 10_to_25; with MOPS N.D. -3.2 -0.0 +0.0 +0.1
pH Growth at pH8 and (C) Trisodium citrate N.D. +0.3 -3.2 +0.0 +0.0
carbon source L-Proline (C) 10 mM N.D. -3.0 +0.3 -0.1 +0.0
no stress control Betaine (C)(N); with MOPS N.D. -2.8 +0.4 -0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -2.7 +0.5 -0.3 +0.2
stress Betaine (C)(N); with TAPS; with chloride N.D. -2.8 +0.5 -0.1 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -2.8 +1.0 -0.4 -0.1
pH Growth at pH9 and (C) Trisodium citrate N.D. -2.9 +0.4 -0.0 +0.3
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS N.D. -2.8 +0.5 +0.0 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS N.D. -2.7 +1.0 -0.3 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -2.7 +0.8 -0.1 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -2.3 +1.1 +0.1 -0.2
carbon source D-Glucosamine Hydrochloride 10 mM (C) N.D. +1.7 -1.1 -0.1 -0.4
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