Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28895 and PFLU_RS28900 are separated by 188 nucleotidesPFLU_RS28900 and PFLU_RS28905 are separated by 158 nucleotidesPFLU_RS28905 and PFLU_RS28910 are separated by 41 nucleotidesPFLU_RS28910 and PFLU_RS28915 are separated by 53 nucleotides PFLU_RS28895: PFLU_RS28895 - DUF2388 domain-containing protein, at 6,425,876 to 6,426,190 _RS28895 PFLU_RS28900: PFLU_RS28900 - porin family protein, at 6,426,379 to 6,427,044 _RS28900 PFLU_RS28905: PFLU_RS28905 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 6,427,203 to 6,428,342 _RS28905 PFLU_RS28910: PFLU_RS28910 - glycine cleavage system protein GcvH, at 6,428,384 to 6,428,767 _RS28910 PFLU_RS28915: PFLU_RS28915 - glycine cleavage system aminomethyltransferase GcvT, at 6,428,821 to 6,429,903 _RS28915
Group Condition PFLU_RS28895 PFLU_RS28900 PFLU_RS28905 PFLU_RS28910 PFLU_RS28915
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride -5.8 +0.2 -0.8 +0.1 -0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.3 +0.1 -4.0 +0.6 -1.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.4 -0.2 -3.4 +0.7 -1.4
stress malate (C) and Ammonium chloride (N); with TAPS -2.0 -0.2 -3.0 +0.4 -0.4
temperature Growth at 30C; with MOPS -4.7 -0.2 -0.0 +0.1 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 +0.1 -4.3 +0.5 -0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -3.4 -0.0 -0.4 +0.7 -1.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 +0.1 -4.0 +0.6 -0.8
pH Growth at pH9 and (C) D-Glucose -2.9 +0.0 -0.6 +0.1 -1.4
stress malate (C) and Ammonium chloride (N); with MOPS -1.9 -0.0 -2.5 +0.3 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.9 -0.4 -1.1 +1.2 -1.7
carbon source D-Mannitol (C) -4.2 +0.1 +1.4 +0.6 -1.3
no stress control Glycine betaine (C)(N); with MOPS -1.8 -0.1 -0.5 +0.9 -1.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.2 +0.1 -0.5 +0.8 -1.4
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.2 +0.3 -0.9 +0.6 -2.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.8 -0.0 -3.7 +0.6 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -1.9 +0.0 -0.9 +0.9 -1.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.1 -0.1 -3.1 +0.9 -1.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.4 -0.1 -3.6 +0.7 -1.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.1 -0.3 -3.0 +1.3 -1.6
stress malate (C) and Ammonium chloride (N); with TAPS +1.1 +0.1 -3.4 +0.4 -0.5
carbon source 4-hydroxyphenylacetic 2 mM (C) -3.0 +0.3 +1.3 +0.7 -1.6
carbon source 4-hydroxyphenylacetic 2 mM (C) -3.0 +0.0 +1.1 +0.9 -1.1
carbon source 4-Aminobutyric (C) -1.5 -0.0 +1.6 +0.8 -2.0
stress Betaine (C)(N); with TAPS; with chloride +1.5 -0.1 -0.9 +0.8 -1.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +1.6 +0.0 -0.3 +1.1 -2.4
carbon source Vanillic Acid (C) -0.1 +0.1 +2.1 +1.2 -1.7
carbon source p-Coumaric (C) -0.5 -0.0 +2.3 +1.0 -1.1
carbon source p-Coumaric (C) +0.2 -0.1 +2.5 +1.0 -1.1
carbon source L-Valine (C) +1.1 +0.1 +2.1 +1.3 -1.0
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