Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28855 and PFLU_RS28860 are separated by 135 nucleotidesPFLU_RS28860 and PFLU_RS28865 are separated by 158 nucleotidesPFLU_RS28865 and PFLU_RS28870 are separated by 85 nucleotidesPFLU_RS28870 and PFLU_RS28875 are separated by 127 nucleotides PFLU_RS28855: PFLU_RS28855 - amino-acid N-acetyltransferase, at 6,417,456 to 6,418,757 _RS28855 PFLU_RS28860: PFLU_RS28860 - acetylornithine deacetylase, at 6,418,893 to 6,420,041 _RS28860 PFLU_RS28865: PFLU_RS28865 - inorganic triphosphatase, at 6,420,200 to 6,421,567 _RS28865 PFLU_RS28870: PFLU_RS28870 - Lrp/AsnC family transcriptional regulator, at 6,421,653 to 6,422,123 _RS28870 PFLU_RS28875: PFLU_RS28875 - hypothetical protein, at 6,422,251 to 6,422,589 _RS28875
Group Condition PFLU_RS28855 PFLU_RS28860 PFLU_RS28865 PFLU_RS28870 PFLU_RS28875
no stress control Glycine betaine (C)(N); with MOPS N.D. -1.5 -0.1 -0.3 -0.6
carbon source Xanthosine (C) N.D. -0.5 -0.5 -0.1 -1.3
carbon source L-Valine (C) N.D. -0.6 +0.0 -0.3 -1.3
carbon source L-Valine (C) N.D. -1.3 +0.0 -0.6 -0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. -0.6 +0.2 -0.3 -0.6
stress Betaine (C)(N); with TAPS; with chloride N.D. -0.8 +0.3 -0.2 -0.4
stress Betaine (C)(N); with MOPS; with chloride N.D. -1.2 +0.3 +0.3 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -1.8 +0.1 +0.5 +0.1
carbon source L-Valine 10 mM (C) N.D. -0.3 +0.5 -0.4 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.8 +0.1 +0.4 -0.5
stress Betaine (C)(N); with MOPS; with chloride N.D. -0.6 +0.4 -0.4 -0.3
carbon source L-Valine 10 mM (C) N.D. -0.2 +0.4 -1.0 +0.1
stress Betaine (C)(N); with MOPS; with chloride N.D. -1.0 +0.4 +0.3 -0.4
carbon source p-Coumaric (C) 5 mM N.D. -0.9 +0.5 -0.3 +0.1
carbon source Inosine (C) N.D. +0.3 -0.0 +0.3 -1.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.9 +0.6 +0.1 -0.3
carbon source Phloretic Acid 2 mM (C) N.D. -0.3 +0.7 -0.1 -0.6
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.3 +0.5 -0.0 -1.0
carbon source L-Valine 10 mM (C) N.D. +0.5 +0.5 -0.6 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.3 +0.7 -0.4 +0.2
carbon source acetate 30 mM (C) N.D. +0.3 +0.8 -0.2 -0.4
pH Growth at pH9 and (C) Trisodium citrate N.D. +0.4 +0.6 +0.0 -0.7
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.2 +0.9 -0.2 +0.4
carbon source NAG (C) N.D. +0.6 +0.7 +0.3 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs N.D. +0.5 +0.3 -0.3 +0.9
carbon and nitrogen source NAG carbon and (N) N.D. +1.1 +0.7 +0.1 -0.2
carbon source L-Arabinose (C); with MOPS N.D. +0.5 +0.7 +0.1 +0.5
temperature shift Temperature shift 30_to_34 N.D. +0.4 +1.0 +0.2 +0.4
pH Growth at pH9 and (C) D-Glucose N.D. +0.5 +0.5 +0.5 +0.5
carbon and nitrogen source NAG carbon and (N) N.D. +0.6 +0.9 +0.4 +0.4
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