Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28565 and PFLU_RS28570 are separated by 69 nucleotidesPFLU_RS28570 and PFLU_RS28575 overlap by 8 nucleotidesPFLU_RS28575 and PFLU_RS28580 are separated by 9 nucleotidesPFLU_RS28580 and PFLU_RS28585 are separated by 141 nucleotides PFLU_RS28565: PFLU_RS28565 - dihydrofolate reductase, at 6,356,339 to 6,356,884 _RS28565 PFLU_RS28570: PFLU_RS28570 - DUF2868 domain-containing protein, at 6,356,954 to 6,358,333 _RS28570 PFLU_RS28575: PFLU_RS28575 - GTPase/DUF3482 domain-containing protein, at 6,358,326 to 6,359,684 _RS28575 PFLU_RS28580: PFLU_RS28580 - hypothetical protein, at 6,359,694 to 6,360,257 _RS28580 PFLU_RS28585: PFLU_RS28585 - HD domain-containing protein, at 6,360,399 to 6,360,950 _RS28585
Group Condition PFLU_RS28565 PFLU_RS28570 PFLU_RS28575 PFLU_RS28580 PFLU_RS28585
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.9 -0.5 +0.1 -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -1.0 -0.1 -0.0 -0.5
no stress control Glycine betaine (C)(N); with TAPS N.D. -1.0 +0.0 +0.2 -0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.8 -0.5 +0.0 +0.1
temperature Growth at 25C N.D. -1.4 +0.3 -0.1 +0.2
carbon source propionate 20 mM (C) N.D. +0.3 -0.7 +0.0 -0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. -0.3 +0.2 -0.1 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. -0.8 -0.4 +0.0 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. -0.9 -0.2 +0.1 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. -0.6 -0.5 +0.1 +0.3
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) N.D. +0.5 -0.3 -0.2 -0.6
carbon source 4-Aminobutyric (C) N.D. -0.2 -0.7 -0.1 +0.6
stress Glucose (C) and Betaine (N); with TAPS; with chloride N.D. -0.6 +0.4 +0.1 -0.3
carbon source L-Carnitine (C) N.D. -0.3 -0.5 +0.0 +0.5
nitrogen source Ammonium chloride (N); with MOPS N.D. +0.4 +0.1 +0.1 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. +0.3 +0.1 +0.2 -0.8
carbon source p-Coumaric (C) 5 mM N.D. -0.3 -0.4 +0.3 +0.3
carbon source L-Lysine (C) N.D. -0.1 -0.5 +0.2 +0.4
carbon source L-Valine 10 mM (C) N.D. +0.6 -0.2 +0.1 -0.4
carbon source Inosine (C) N.D. +0.7 -0.3 +0.1 -0.4
stress Betaine (C)(N); with MOPS; with chloride N.D. +0.2 +0.5 -0.2 -0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.7 -0.5 -0.1 +0.1
carbon source Vanillic Acid (C) N.D. +0.7 -0.1 +0.1 -0.4
carbon source Choline chloride (C) N.D. +0.6 +0.1 +0.1 -0.4
carbon source L-Carnitine (C) N.D. +0.9 -0.5 +0.1 +0.2
pH Growth at pH9 and (C) Trisodium citrate N.D. -0.2 +0.4 -0.3 +0.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. +0.6 -0.3 +0.5 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. -0.2 +0.6 +0.1 +0.7
temperature shift Temperature shift 10_to_25; with MOPS N.D. +0.8 +0.1 -0.1 +0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. +0.9 +0.1 +0.1 +0.4
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