Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28470 and PFLU_RS28475 are separated by 179 nucleotidesPFLU_RS28475 and PFLU_RS28480 overlap by 14 nucleotidesPFLU_RS28480 and PFLU_RS28485 are separated by 33 nucleotidesPFLU_RS28485 and PFLU_RS28490 are separated by 146 nucleotides PFLU_RS28470: PFLU_RS28470 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 6,334,314 to 6,334,931 _RS28470 PFLU_RS28475: PFLU_RS28475 - hydrolase, at 6,335,111 to 6,336,103 _RS28475 PFLU_RS28480: PFLU_RS28480 - sulfurtransferase, at 6,336,090 to 6,336,944 _RS28480 PFLU_RS28485: PFLU_RS28485 - TetR/AcrR family transcriptional regulator, at 6,336,978 to 6,337,649 _RS28485 PFLU_RS28490: PFLU_RS28490 - coniferyl aldehyde dehydrogenase, at 6,337,796 to 6,339,223 _RS28490
Group Condition PFLU_RS28470 PFLU_RS28475 PFLU_RS28480 PFLU_RS28485 PFLU_RS28490
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -2.7 -0.4 -0.5 -0.4 +0.0
stress Betaine (C)(N); with TAPS; with chloride -2.7 -0.1 -0.1 -0.9 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.6 +0.3 -0.7 -0.4 -0.1
stress Betaine (C)(N); with TAPS; with chloride -2.5 -0.0 -0.3 -0.3 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -3.0 +0.2 +0.0 +0.1 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7 -0.2 -1.0 -0.2 +0.2
carbon source Xanthosine (C) -1.5 -0.0 -0.8 -0.2 -0.1
stress L-Glutamine (C)(N); with MOPS; with chloride -1.9 -0.1 -0.6 -0.1 +0.1
stress Betaine (C)(N); with TAPS; with chloride -2.1 -0.0 -0.1 -0.2 -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.6 -0.3 +0.0 +0.0 +0.3
stress Glucose (C) and Betaine (N); with TAPS; with chloride -2.3 +0.1 -0.2 -0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.4 +0.1 +0.1 -0.2 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -2.7 -0.1 +0.2 -0.1 +0.2
carbon source acetate 30 mM (C) -2.2 -0.2 -0.0 -0.2 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.3 -0.2 +0.1 +0.1 -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.8 +0.1 -0.7 +0.1 -0.1
carbon source 4-hydroxyphenylacetic 2 mM (C) -1.8 +0.1 -0.3 -0.2 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.5 +0.1 -0.5 -0.5 +0.2
carbon source p-Coumaric 2 mM (C) -1.2 -0.4 -0.7 -0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.6 +0.1 +0.1 +0.2 -0.0
no stress control Glycine betaine (C)(N); with TAPS -2.0 +0.1 +0.2 -0.4 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -2.1 +0.1 -0.1 +0.1 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.8 -0.2 -0.3 +0.2 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -2.2 -0.1 +0.3 -0.1 +0.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -2.1 +0.1 -0.2 +0.1 +0.2
stress Betaine (C)(N); with TAPS; with chloride -1.7 -0.2 +0.2 -0.3 +0.2
carbon source acetate 30 mM (C) -2.0 -0.2 +0.5 -0.3 +0.3
stress L-Glutamine (C)(N); with TAPS; with chloride -2.3 +0.1 +0.3 +0.2 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 +0.3 +0.4 +0.2 +0.3
carbon source p-Coumaric (C) 5 mM +2.2 -0.0 +0.2 -0.2 +0.1
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