Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28395 and PFLU_RS28400 overlap by 4 nucleotidesPFLU_RS28400 and PFLU_RS28405 overlap by 4 nucleotidesPFLU_RS28405 and PFLU_RS28410 are separated by 17 nucleotidesPFLU_RS28410 and PFLU_RS28415 are separated by 142 nucleotides PFLU_RS28395: PFLU_RS28395 - DUF4426 domain-containing protein, at 6,321,188 to 6,321,622 _RS28395 PFLU_RS28400: PFLU_RS28400 - RdgB/HAM1 family non-canonical purine NTP pyrophosphatase, at 6,321,619 to 6,322,215 _RS28400 PFLU_RS28405: PFLU_RS28405 - radical SAM family heme chaperone HemW, at 6,322,212 to 6,323,414 _RS28405 PFLU_RS28410: PFLU_RS28410 - DUF3392 domain-containing protein, at 6,323,432 to 6,323,755 _RS28410 PFLU_RS28415: PFLU_RS28415 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 6,323,898 to 6,324,623 _RS28415
Group Condition PFLU_RS28395 PFLU_RS28400 PFLU_RS28405 PFLU_RS28410 PFLU_RS28415
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.2 -0.1 +0.1 -4.6
stress Betaine (C)(N); with TAPS; with chloride -0.8 -0.2 -0.4 -0.2 -3.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 +0.0 +0.1 +0.1 -5.2
stress Betaine (C)(N); with TAPS; with chloride +0.2 +0.0 -0.2 -0.4 -4.3
stress Betaine (C)(N); with TAPS; with chloride -0.1 -0.5 -0.3 +0.1 -3.7
stress Betaine (C)(N); with TAPS; with chloride +0.3 -0.7 +0.0 +0.2 -4.2
stress Sucrose (C) and Glycine betaine (N); with TAPS +0.2 +0.0 +0.0 +0.1 -4.7
stress Glucose (C) and Betaine (N); with MOPS; with chloride +0.2 +0.1 -0.1 -0.1 -4.4
stress Glucose (C) and Betaine (N); with MOPS; with chloride -0.1 +0.6 -0.2 -0.2 -4.4
stress Glucose (C) and Betaine (N); with MOPS; with chloride +0.1 +0.0 -0.3 -0.2 -3.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.4 -1.0 +0.0 +0.2 -3.1
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.1 +0.1 -0.4 -3.9
stress Glucose (C) and Betaine (N); with MOPS; with chloride +0.2 -0.2 -0.1 -0.1 -3.7
stress Betaine (C)(N); with TAPS; with chloride +0.3 +0.2 -0.1 +0.2 -4.5
stress Sucrose (C) and Glycine betaine (N); with TAPS +0.2 +0.2 +0.0 +0.3 -4.5
stress Glucose (C) and Betaine (N); with TAPS; with chloride -0.3 -0.2 -0.0 +0.3 -3.6
stress Betaine (C)(N); with TAPS; with chloride -0.2 +0.0 -0.2 +0.2 -3.6
stress Sucrose (C) and Glycine betaine (N); with TAPS +0.1 -0.0 +0.1 -0.1 -3.9
stress Sucrose (C) and Glycine betaine (N); with TAPS +0.2 -0.0 +0.2 +0.1 -3.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.4 +0.2 -0.1 +0.0 -4.1
stress Glucose (C) and Betaine (N); with MOPS; with chloride +0.4 +0.7 -0.2 +0.0 -4.4
stress Betaine (C)(N); with TAPS; with chloride -0.1 +0.1 +0.2 +0.1 -3.8
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.2 +0.1 +0.1 +0.3 -4.1
stress Betaine (C)(N); with MOPS; with chloride -0.3 +0.5 -0.1 -0.1 -3.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.5 -0.2 -0.1 -0.4 -3.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 +0.2 +0.1 +0.0 -3.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 +0.2 -0.4 +0.4 -2.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.5 +0.3 -0.3 -2.6
stress Betaine (C)(N); with TAPS; with chloride +0.3 -0.2 -0.3 +0.8 -2.8
stress Betaine (C)(N); with MOPS; with chloride +0.6 +0.3 +0.5 -0.4 -2.7
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