Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28320 and PFLU_RS28325 are separated by 77 nucleotidesPFLU_RS28325 and PFLU_RS28330 are separated by 182 nucleotidesPFLU_RS28330 and PFLU_RS28335 overlap by 1 nucleotidesPFLU_RS28335 and PFLU_RS28340 are separated by 73 nucleotides PFLU_RS28320: PFLU_RS28320 - glutathione synthase, at 6,308,438 to 6,309,391 _RS28320 PFLU_RS28325: PFLU_RS28325 - energy transducer TonB, at 6,309,469 to 6,310,374 _RS28325 PFLU_RS28330: PFLU_RS28330 - YqgE/AlgH family protein, at 6,310,557 to 6,311,126 _RS28330 PFLU_RS28335: PFLU_RS28335 - Holliday junction resolvase RuvX, at 6,311,126 to 6,311,563 _RS28335 PFLU_RS28340: PFLU_RS28340 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 6,311,637 to 6,312,143 _RS28340
Group Condition PFLU_RS28320 PFLU_RS28325 PFLU_RS28330 PFLU_RS28335 PFLU_RS28340
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.4 -3.5 +0.3 N.D. -0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -2.7 -3.3 +0.5 N.D. -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -1.2 -1.0 N.D. -2.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -1.9 +0.3 N.D. -2.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.5 -3.1 +0.2 N.D. -0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.0 -1.9 -0.1 N.D. -1.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -1.5 -3.0 +0.0 N.D. -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG -0.4 -2.8 -0.6 N.D. -0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG -0.8 -1.9 -0.7 N.D. -1.0
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG -1.2 -2.3 -0.3 N.D. -0.7
stress Glucose (C) and Ammonium chloride (N); with MOPS; with PEG -0.6 -2.5 -0.6 N.D. -0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.9 -2.7 +0.0 N.D. +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -2.4 -1.7 +0.1 N.D. -0.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.5 -2.5 -0.3 N.D. +0.1
temperature shift Temperature shift 30_to_34 -1.5 -2.8 +0.4 N.D. +0.1
temperature Growth at 34C -0.9 -2.9 -0.2 N.D. +0.7
temperature shift Temperature shift 30_to_34 -1.5 -2.3 +0.2 N.D. +0.5
stress malate (C) and Ammonium chloride (N); with TAPS +0.7 -3.6 +0.2 N.D. -0.2
carbon source acetate (C) -1.5 -2.1 +0.2 N.D. +0.7
temperature shift Temperature shift 30_to_34 -1.8 -1.7 +0.5 N.D. +0.9
carbon source NAG (C) +2.2 -0.9 -0.3 N.D. -2.2
carbon and nitrogen source NAG carbon and (N) +0.9 -2.2 -0.4 N.D. +1.3
carbon source 4-Aminobutyric (C) +1.9 -1.0 -0.6 N.D. +1.3
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.9 +3.5 +0.0 N.D. -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.4 +4.2 -0.6 N.D. +0.6
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.2 +4.4 +0.2 N.D. -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.1 +4.3 -0.4 N.D. +0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +1.1 +4.5 +0.8 N.D. -0.3
carbon source Ferulic Acid (C) 1.5 mM +1.8 +5.7 -0.1 N.D. +0.2
carbon source Ferulic Acid (C) 1.5 mM +1.3 +7.0 -0.4 N.D. +0.8
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