Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28290 and PFLU_RS28295 overlap by 8 nucleotidesPFLU_RS28295 and PFLU_RS28300 are separated by 105 nucleotidesPFLU_RS28300 and PFLU_RS28305 overlap by 4 nucleotidesPFLU_RS28305 and PFLU_RS28310 are separated by 12 nucleotides PFLU_RS28290: PFLU_RS28290 - chemotaxis protein CheW, at 6,298,421 to 6,298,876 _RS28290 PFLU_RS28295: PFLU_RS28295 - response regulator, at 6,298,869 to 6,304,688 _RS28295 PFLU_RS28300: PFLU_RS28300 - chemotaxis protein, at 6,304,794 to 6,306,845 _RS28300 PFLU_RS28305: PFLU_RS28305 - purine-binding chemotaxis protein CheW, at 6,306,842 to 6,307,366 _RS28305 PFLU_RS28310: PFLU_RS28310 - response regulator, at 6,307,379 to 6,307,744 _RS28310
Group Condition PFLU_RS28290 PFLU_RS28295 PFLU_RS28300 PFLU_RS28305 PFLU_RS28310
carbon source Phloretic Acid 2 mM (C) -1.9 -1.2 -1.7 -1.0 -2.4
carbon source 4-Hydroxyphenylpropionic (C) 1.5 mM -1.1 -0.8 -0.4 -1.5 -3.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -0.6 -1.0 -2.2 -2.0
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.8 -1.1 -1.0 -1.6 -1.9
carbon source Phloretic Acid 2 mM (C) -1.2 -1.0 -1.9 -0.6 -1.5
carbon source Phloretic Acid 2 mM (C) -1.9 -1.4 -1.7 -0.9 -0.2
temperature shift Temperature shift 10_to_30 -0.5 -0.5 -0.7 -0.8 -3.7
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -1.0 -0.8 -0.8 -2.9
carbon source L-Ornithine 10 mM (C) -1.1 -0.9 -1.7 -0.9 -1.3
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.8 -1.0 -0.5 -0.8 -2.8
carbon source L-Ornithine (C) -0.4 -0.8 -0.9 -0.8 -2.9
carbon source L-Ornithine 10 mM (C) -0.4 -0.8 -0.8 -0.7 -2.9
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.2 -1.1 -0.8 -0.7 -1.8
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.7 -0.4 -0.5 -1.2 -2.6
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.4 -0.8 -1.0 -1.1 -2.3
carbon source p-Coumaric (C) 1.5 mM -0.5 -0.4 -0.7 -0.8 -2.9
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.6 -1.0 -0.2 -1.6 -1.9
carbon source D-Trehalose (C) -0.4 -0.5 -0.2 -0.3 -3.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.7 -0.6 -0.0 -0.8 -2.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 -0.4 -0.4 -0.1 -2.9
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -0.9 -0.4 -0.3 -2.7
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.8 -0.5 -0.6 -1.0 -2.1
carbon source NAG (C); with MOPS -0.1 -0.4 -0.8 -0.8 -2.8
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 +0.4 +0.6 +0.7 -3.0
carbon source 4-Aminobutyric (C) +1.3 +1.0 +0.7 +1.1 +1.0
stress malate (C) and Ammonium chloride (N); with MOPS +1.1 +1.2 +1.1 +0.9 +1.3
stress malate (C) and Ammonium chloride (N); with MOPS +0.9 +1.2 +1.2 +1.0 +1.9
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.2 +1.0 +1.0 +1.2 +2.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +1.2 +1.1 +0.9 +1.4 +2.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +1.4 +1.4 +1.4 +1.4 +2.1
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