Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS28005 and PFLU_RS28010 are separated by 224 nucleotidesPFLU_RS28010 and PFLU_RS28015 are separated by 36 nucleotidesPFLU_RS28015 and PFLU_RS28020 are separated by 82 nucleotidesPFLU_RS28020 and PFLU_RS28025 are separated by 198 nucleotides PFLU_RS28005: PFLU_RS28005 - TldD/PmbA family protein, at 6,236,159 to 6,237,475 _RS28005 PFLU_RS28010: PFLU_RS28010 - alpha/beta hydrolase, at 6,237,700 to 6,238,590 _RS28010 PFLU_RS28015: PFLU_RS28015 - DHA2 family efflux MFS transporter permease subunit, at 6,238,627 to 6,240,054 _RS28015 PFLU_RS28020: PFLU_RS28020 - ATP-dependent RNA helicase DbpA, at 6,240,137 to 6,241,522 _RS28020 PFLU_RS28025: PFLU_RS28025 - NAD(P)/FAD-dependent oxidoreductase, at 6,241,721 to 6,242,899 _RS28025
Group Condition PFLU_RS28005 PFLU_RS28010 PFLU_RS28015 PFLU_RS28020 PFLU_RS28025
stress Betaine (C)(N); with MOPS; with chloride -0.8 +0.3 -0.8 -1.7 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -0.2 -0.3 -2.3 -0.3
no stress control L-Glutamine (C)(N); with MOPS -0.2 -0.2 +0.0 -1.8 -0.0
no stress control Glucose (C) and L-Glutamine (N); with MOPS -0.4 -0.1 +0.2 -1.9 +0.0
carbon source Xanthosine (C) -0.3 -0.2 +0.1 -1.6 -0.1
carbon source Phloretic Acid 2 mM (C) -0.1 -0.1 -0.5 -1.8 +0.6
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.1 -0.2 -1.5 +0.5
no stress control malate (C) and Ammonium chloride (N); with MOPS -0.2 +0.1 +0.0 -1.6 -0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.5 +0.2 -0.4 -0.7 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.1 +0.0 -0.7 -1.2 +0.0
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS +0.2 +0.2 +0.0 -2.3 +0.2
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.0 -0.1 +0.2 -1.6 +0.0
no stress control Glucose (C) and Ammonium chloride (N); with MOPS -0.4 +0.1 +0.2 -1.3 -0.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.5 +0.1 +0.0 -2.0 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.2 +0.5 -2.1 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -0.1 +0.1 -1.4 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.1 -0.4 -1.1 -0.0
carbon source L-Arabinose (C) +0.4 -0.3 -0.1 -1.1 +0.1
stress Betaine (C)(N); with MOPS; with chloride +0.7 -0.0 +0.1 -1.8 +0.2
carbon and nitrogen source NAG carbon and (N) +0.1 +0.2 -0.5 -1.0 +0.3
nitrogen source nitrate (N) +0.7 -0.0 -0.5 -0.8 -0.0
stress Glucose (C) and L-Glutamine (N); with MOPS; with chloride +0.3 +0.2 -0.2 -1.0 +0.2
carbon source L-Ornithine 10 mM (C) -0.2 +0.3 +0.2 -1.0 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 +0.2 +0.2 -1.4 +0.1
carbon source D,L-Malic Acid (C) +0.6 +0.2 -0.3 -0.7 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.6 -0.0 +0.1 -1.5 +0.6
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.2 +0.6 -0.0 -1.1 +0.6
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.0 +0.5 -1.1 +0.5
carbon source Phloretic Acid 2 mM (C) +0.7 +0.0 -0.2 -0.9 +0.4
carbon source L-Valine 10 mM (C) -0.3 +0.2 +0.6 +0.4 +0.5
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