Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS27985 and PFLU_RS27990 are separated by 110 nucleotidesPFLU_RS27990 and PFLU_RS27995 are separated by 142 nucleotidesPFLU_RS27995 and PFLU_RS28000 are separated by 191 nucleotidesPFLU_RS28000 and PFLU_RS28005 overlap by 1 nucleotides PFLU_RS27985: PFLU_RS27985 - transcriptional regulator BetI, at 6,230,503 to 6,231,096 _RS27985 PFLU_RS27990: PFLU_RS27990 - betaine-aldehyde dehydrogenase, at 6,231,207 to 6,232,679 _RS27990 PFLU_RS27995: PFLU_RS27995 - choline dehydrogenase, at 6,232,822 to 6,234,525 _RS27995 PFLU_RS28000: PFLU_RS28000 - TldD/PmbA family protein, at 6,234,717 to 6,236,159 _RS28000 PFLU_RS28005: PFLU_RS28005 - TldD/PmbA family protein, at 6,236,159 to 6,237,475 _RS28005
Group Condition PFLU_RS27985 PFLU_RS27990 PFLU_RS27995 PFLU_RS28000 PFLU_RS28005
carbon source Choline chloride 10 mM (C) -3.0 -3.8 -3.8 -0.2 -0.2
carbon source Choline chloride 10 mM (C) -3.3 -3.3 -3.9 -0.2 -0.1
carbon source Choline chloride 10 mM (C) -2.9 -2.7 -3.0 +0.0 -0.8
carbon source sn-glycero-3-phosphocholine 10 mM (C) -0.3 -3.2 -4.2 -0.6 -0.5
carbon source Choline chloride (C) -2.8 -3.1 -2.9 -0.2 +0.4
carbon source sn-glycero-3-phosphocholine 10 mM (C) -0.1 -3.3 -4.4 -0.1 -0.4
carbon source sn-glycero-3-phosphocholine 10 mM (C) -0.4 -2.9 -3.8 -0.1 -0.2
carbon source Choline chloride (C) -2.1 -2.2 -2.2 +0.2 +0.1
carbon source sn-glycero-3-phosphocholine (C) -0.1 -3.0 -3.2 +0.1 +0.1
carbon source sn-glycero-3-phosphocholine (C) -0.6 -2.2 -2.9 -0.2 +0.1
carbon source sn-glycero-3-phosphocholine (C) +0.1 -2.8 -3.3 +0.1 +0.2
carbon source Choline chloride (C) -1.8 -1.7 -1.8 +0.4 -0.0
no stress control Glycine betaine (C)(N); with TAPS -0.7 -2.4 -1.1 +0.1 +0.1
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -0.9 -1.6 -0.8 -0.7 +0.1
no stress control Glycine betaine (C)(N); with TAPS -1.1 -1.5 -1.1 +0.0 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -1.4 -0.4 -0.3 -0.1 -0.6
no stress control 4-Hydroxybenzoic Acid (C) and Ammonium chloride (N); with MOPS -1.4 -1.1 -0.4 -0.2 +0.3
no stress control Glycine betaine (C)(N); with TAPS -0.6 -1.6 -0.9 -0.0 +0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.3 -0.8 +0.0 -0.4 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.4 -1.1 -0.2 +0.1 +0.2
no stress control Glycine betaine (C)(N); with TAPS -0.7 -0.6 -1.3 +0.5 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.1 -0.6 +0.2 +0.1 -0.7
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -1.0 -0.5 -0.1 +0.4 -0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -1.0 -1.5 -0.1 +0.2 +0.3
carbon source L-Ornithine 10 mM (C) -1.5 +0.5 +0.3 -0.5 -0.3
nitrogen source NAG (N); with MOPS -1.4 +0.2 -0.0 -0.4 +0.6
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 +0.5 +0.5 -0.9 -0.2
stress Betaine (C)(N); with MOPS; with chloride +1.1 -0.3 +0.3 -0.3 -0.8
carbon source Inosine (C) +2.6 -0.5 -0.8 -0.1 -0.2
carbon source Inosine (C) +2.4 -0.7 -0.6 +0.3 +0.5
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