Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS27975 and PFLU_RS27980 are separated by 188 nucleotidesPFLU_RS27980 and PFLU_RS27985 are separated by 332 nucleotidesPFLU_RS27985 and PFLU_RS27990 are separated by 110 nucleotidesPFLU_RS27990 and PFLU_RS27995 are separated by 142 nucleotides PFLU_RS27975: PFLU_RS27975 - choline ABC transporter ATP-binding protein, at 6,226,812 to 6,227,990 _RS27975 PFLU_RS27980: PFLU_RS27980 - BCCT family transporter, at 6,228,179 to 6,230,170 _RS27980 PFLU_RS27985: PFLU_RS27985 - transcriptional regulator BetI, at 6,230,503 to 6,231,096 _RS27985 PFLU_RS27990: PFLU_RS27990 - betaine-aldehyde dehydrogenase, at 6,231,207 to 6,232,679 _RS27990 PFLU_RS27995: PFLU_RS27995 - choline dehydrogenase, at 6,232,822 to 6,234,525 _RS27995
Group Condition PFLU_RS27975 PFLU_RS27980 PFLU_RS27985 PFLU_RS27990 PFLU_RS27995
carbon source Choline chloride 10 mM (C) -4.1 -2.2 -3.0 -3.8 -3.8
carbon source Choline chloride 10 mM (C) -3.6 -2.1 -3.3 -3.3 -3.9
carbon source Choline chloride 10 mM (C) -4.9 -2.5 -2.9 -2.7 -3.0
carbon source Choline chloride (C) -4.0 -3.1 -2.8 -3.1 -2.9
carbon source sn-glycero-3-phosphocholine 10 mM (C) -4.9 -0.4 -0.4 -2.9 -3.8
carbon source sn-glycero-3-phosphocholine 10 mM (C) -4.1 -0.4 -0.3 -3.2 -4.2
carbon source sn-glycero-3-phosphocholine 10 mM (C) -3.3 -0.6 -0.1 -3.3 -4.4
carbon source Choline chloride (C) -2.1 -2.2 -2.1 -2.2 -2.2
carbon source sn-glycero-3-phosphocholine (C) -3.5 -0.4 -0.6 -2.2 -2.9
carbon source sn-glycero-3-phosphocholine (C) -2.9 -0.5 +0.1 -2.8 -3.3
carbon source Choline chloride (C) -2.0 -2.1 -1.8 -1.7 -1.8
carbon source sn-glycero-3-phosphocholine (C) -2.0 -0.5 -0.1 -3.0 -3.2
no stress control Glycine betaine (C)(N); with TAPS -3.4 -0.2 -1.1 -1.5 -1.1
no stress control Glycine betaine (C)(N); with TAPS -2.0 -0.3 -0.7 -2.4 -1.1
no stress control Betaine (C)(N); with MOPS -4.5 -0.1 -0.4 -0.6 -0.3
carbon source Betaine 10 mM (C) -5.1 -0.3 +0.7 -0.5 -0.2
no stress control Glycine betaine (C)(N); with TAPS -1.9 -0.5 -0.6 -1.6 -0.9
no stress control Glycine betaine (C)(N); with TAPS -1.8 -0.3 -0.7 -0.6 -1.3
carbon source L-Carnitine 10 mM (C) -4.8 -0.6 +0.7 +0.2 +0.1
stress Betaine (C)(N); with MOPS; with chloride -4.8 +0.1 +0.9 -0.1 +0.2
stress Glucose (C) and Betaine (N); with MOPS; with chloride -4.1 -0.4 +0.2 +0.3 +0.2
stress Betaine (C)(N); with TAPS; with chloride -4.1 -0.3 +0.3 +0.3 +0.3
carbon source L-Carnitine 10 mM (C) -3.7 -0.4 +0.7 -0.0 -0.1
stress Betaine (C)(N); with TAPS; with chloride -3.9 -0.1 +0.5 -0.1 +0.2
stress Glucose (C) and Betaine (N); with MOPS; with chloride -3.6 -0.3 +0.6 -0.1 +0.2
stress Betaine (C)(N); with MOPS; with chloride -3.4 -0.4 +0.9 +0.1 +0.2
stress Betaine (C)(N); with MOPS; with chloride -3.4 -0.6 +0.9 +0.5 +0.1
stress Glucose (C) and Betaine (N); with MOPS; with chloride -3.3 -0.3 +0.7 +0.3 +0.1
stress Betaine (C)(N); with MOPS; with chloride -2.4 -0.4 +1.1 -0.5 +0.5
stress Betaine (C)(N); with MOPS; with chloride -2.7 +0.1 +1.7 -0.2 +0.4
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