Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS27730 and PFLU_RS27735 are separated by 109 nucleotidesPFLU_RS27735 and PFLU_RS27740 overlap by 4 nucleotidesPFLU_RS27740 and PFLU_RS27745 are separated by 102 nucleotidesPFLU_RS27745 and PFLU_RS27750 are separated by 92 nucleotides PFLU_RS27730: PFLU_RS27730 - transporter substrate-binding domain-containing protein, at 6,173,743 to 6,174,504 _RS27730 PFLU_RS27735: PFLU_RS27735 - ABC transporter permease subunit, at 6,174,614 to 6,175,333 _RS27735 PFLU_RS27740: PFLU_RS27740 - ABC transporter permease subunit, at 6,175,330 to 6,176,040 _RS27740 PFLU_RS27745: PFLU_RS27745 - amino acid ABC transporter ATP-binding protein, at 6,176,143 to 6,176,868 _RS27745 PFLU_RS27750: PFLU_RS27750 - hypothetical protein, at 6,176,961 to 6,177,578 _RS27750
Group Condition PFLU_RS27730 PFLU_RS27735 PFLU_RS27740 PFLU_RS27745 PFLU_RS27750
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.3 -0.3 -0.2 -0.8 -0.3
carbon source Phloretic Acid 2 mM (C) -0.0 +0.4 -0.2 -1.3 -0.3
carbon source propionate 20 mM (C) -0.9 +0.1 +0.2 -0.0 -0.6
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.1 +0.1 -0.3 +0.2 -1.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.7 -0.3 -0.4 +0.6
no stress control Glucose (C) and nitrate (N); with MOPS -0.5 -0.2 -0.2 -0.6 +0.6
carbon source L-Valine 10 mM (C) -0.2 -0.8 -0.5 +0.6 -0.1
pH Growth at pH9 and (C) D-Glucose +0.1 -0.4 +0.2 -1.2 +0.8
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 +0.3 +0.0 -0.8 +0.4
carbon source m-Inositol (C) +0.4 +0.3 -0.1 -0.8 -0.1
pH Growth at pH9 and (C) Trisodium citrate -0.3 -0.3 -0.1 +0.9 -0.4
carbon source 2-Keto-D-gluconic hemicalcium salt (C) -0.0 +0.2 -0.3 -0.6 +0.7
carbon source Shikimic Acid (C) -0.5 +0.1 -0.2 +1.0 -0.2
no stress control Glycine betaine (C)(N); with MOPS +0.4 +0.5 +0.2 -0.6 -0.2
stress Betaine (C)(N); with MOPS; with chloride +0.2 -0.5 +0.1 +1.0 -0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.4 -0.2 +0.5 +0.7
pH Growth at pH8 and (C) Trisodium citrate +0.1 -0.3 -0.4 +0.6 +0.5
no stress control Glycine betaine (C)(N); with TAPS +0.3 +0.4 +0.3 +0.4 -0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.5 +0.4 +0.1 +0.5 +0.3
carbon source L-Ornithine 10 mM (C) -0.3 -0.1 +0.4 -0.1 +0.8
temperature Growth at 25C; with MOPS +0.4 +0.6 +0.3 +0.3 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 -0.1 +0.5 +1.1 -0.6
carbon source Phloretic Acid 2 mM (C) -0.3 +0.7 +0.4 -0.4 +0.9
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 +0.5 -0.2 +1.0 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.6 +0.3 +0.4 -0.2 +0.5
carbon source p-Coumaric 2 mM (C) +0.2 +0.3 +0.3 +0.5 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +0.5 +0.1 +1.1 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.4 +0.0 +0.1 +0.4 +1.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.1 +0.6 +0.0 +0.7 +0.9
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.4 +0.3 +0.2 +0.8 +0.4
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