Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS27555 and PFLU_RS27560 are separated by 10 nucleotidesPFLU_RS27560 and PFLU_RS27565 are separated by 59 nucleotidesPFLU_RS27565 and PFLU_RS31175 are separated by 159 nucleotidesPFLU_RS31175 and PFLU_RS27570 are separated by 66 nucleotides PFLU_RS27555: PFLU_RS27555 - FAD-dependent oxidoreductase, at 6,130,755 to 6,132,458 _RS27555 PFLU_RS27560: PFLU_RS27560 - carbon-nitrogen hydrolase family protein, at 6,132,469 to 6,133,263 _RS27560 PFLU_RS27565: PFLU_RS27565 - pyrroloquinoline quinone biosynthesis protein PqqF, at 6,133,323 to 6,135,656 _RS27565 PFLU_RS31175: PFLU_RS31175 - pyrroloquinoline quinone precursor peptide PqqA, at 6,135,816 to 6,135,890 _RS31175 PFLU_RS27570: PFLU_RS27570 - pyrroloquinoline quinone biosynthesis protein PqqB, at 6,135,957 to 6,136,868 _RS27570
Group Condition PFLU_RS27555 PFLU_RS27560 PFLU_RS27565 PFLU_RS31175 PFLU_RS27570
carbon source p-Coumaric 2 mM (C) -0.8 -0.7 +0.1 -0.8 -0.1
carbon source NAG (C) -0.9 -0.5 -0.2 -0.3 -0.2
carbon source Phloretic Acid 2 mM (C) -0.4 -0.3 -0.3 -0.6 -0.2
carbon source p-Coumaric 2 mM (C) -0.7 -0.7 -0.0 -0.5 +0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.5 -0.3 -0.5 -0.1 -0.3
carbon source NAG (C) -0.9 -0.3 -0.2 -0.4 +0.1
carbon source Xanthosine (C) -0.2 -0.3 +0.2 -0.9 -0.4
nitrogen source Ammonium chloride (N); with MOPS -0.3 -0.3 -0.3 -0.8 +0.1
carbon source propionate 20 mM (C) -0.6 -0.3 +0.2 -0.4 -0.3
carbon source Inosine (C) -0.6 -0.0 +0.1 -0.3 -0.6
carbon source D-(+)-Galactosamine (C) -0.5 -0.5 -0.1 -0.4 +0.1
carbon source 4-Guanidinobutyric (C) -0.4 -0.3 +0.1 -0.5 -0.4
carbon source p-Coumaric (C) -0.7 -0.5 -0.0 -0.3 +0.1
carbon source 4-Aminobutyric (C) -1.1 -0.9 -0.0 +0.6 +0.1
temperature Growth at 25C -0.4 -0.3 +0.3 -0.5 -0.4
carbon source NAG (C) -0.9 -0.3 -0.0 -0.4 +0.3
carbon source 4-Guanidinobutyric (C) -0.6 -0.6 -0.1 +0.2 -0.1
pH Growth at pH9 and (C) Trisodium citrate -0.6 -0.3 +0.3 -0.5 -0.2
carbon source L-Lysine (C) -0.8 -0.7 -0.0 +0.5 -0.0
carbon source 4-Aminobutyric (C) -0.8 -0.5 +0.3 -0.1 +0.2
pH Growth at pH9 and (C) D-Glucose -1.1 -0.2 +0.4 +0.2 +0.2
carbon source Xanthosine (C) -0.3 -0.1 +0.2 +0.7 -0.5
pH Growth at pH8 and (C) Trisodium citrate -0.5 +0.1 -0.2 +1.1 -0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.3 +0.2 -0.8 -0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.6 +0.4 +0.0 -0.2 -0.5
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.2 -0.3 +0.2 +0.6 +0.5
carbon source L-Valine 10 mM (C) +0.7 +0.2 +0.5 -0.3 -0.1
carbon source L-Valine 10 mM (C) +0.5 +0.4 +0.4 -0.2 -0.1
no stress control Glycine betaine (C)(N); with TAPS +0.2 +0.5 +0.5 +0.2 -0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.8 +0.6 -0.1 +0.3 +0.2
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