Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26995 and PFLU_RS27000 are separated by 96 nucleotidesPFLU_RS27000 and PFLU_RS27005 are separated by 21 nucleotidesPFLU_RS27005 and PFLU_RS27010 are separated by 105 nucleotidesPFLU_RS27010 and PFLU_RS27015 are separated by 169 nucleotides PFLU_RS26995: PFLU_RS26995 - GlxA family transcriptional regulator, at 6,024,483 to 6,025,442 _RS26995 PFLU_RS27000: PFLU_RS27000 - cysteine hydrolase, at 6,025,539 to 6,026,099 _RS27000 PFLU_RS27005: PFLU_RS27005 - trans-aconitate 2-methyltransferase, at 6,026,121 to 6,026,882 _RS27005 PFLU_RS27010: PFLU_RS27010 - DUF4365 domain-containing protein, at 6,026,988 to 6,027,746 _RS27010 PFLU_RS27015: PFLU_RS27015 - single-stranded DNA-binding protein, at 6,027,916 to 6,028,431 _RS27015
Group Condition PFLU_RS26995 PFLU_RS27000 PFLU_RS27005 PFLU_RS27010 PFLU_RS27015
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.9 -0.3 -0.3 -0.2 N.D.
nitrogen source NAG (N); with MOPS +0.3 -0.2 -0.6 -0.4 N.D.
carbon source Ferulic Acid 2 mM (C) -0.5 -0.1 -0.3 +0.1 N.D.
carbon source p-Coumaric (C) 5 mM +0.5 -0.6 -0.4 -0.1 N.D.
carbon source D-Glucosamine Hydrochloride 10 mM (C) -0.0 +0.4 -0.5 -0.2 N.D.
carbon source L-Ornithine 10 mM (C) -0.6 -0.1 +0.1 +0.2 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.3 -0.2 -0.4 -0.1 N.D.
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.7 +0.3 -0.1 +0.2 N.D.
no stress control Glycine betaine (C)(N); with MOPS -0.2 -0.4 +0.2 +0.3 N.D.
carbon and nitrogen source NAG carbon and (N) +0.3 +0.2 -0.5 +0.0 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +0.2 -0.0 -0.4 N.D.
pH Growth at pH8 and (C) Trisodium citrate +0.4 +0.2 -0.3 -0.2 N.D.
carbon source D,L-Malic Acid (C) +0.4 +0.3 -0.1 -0.4 N.D.
carbon source L-Valine (C) +0.7 -0.1 -0.1 -0.2 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.5 +0.1 +0.3 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 +0.5 -0.7 -0.1 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.5 -0.1 -0.2 +0.2 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -0.0 +0.6 +0.2 N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.2 +0.2 -0.4 +0.6 N.D.
carbon source NAG (C) +0.4 +0.1 -0.3 +0.3 N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.6 -0.0 -0.2 +0.2 N.D.
carbon source L-Carnitine (C) -0.3 +0.2 +0.6 +0.1 N.D.
pH Growth at pH6 and (C) Trisodium citrate +0.5 +0.2 -0.2 +0.2 N.D.
carbon source NAG (C) +0.4 +0.4 -0.3 +0.2 N.D.
carbon source Phloretic Acid 2 mM (C) +0.5 +0.3 +0.2 -0.2 N.D.
carbon source L-Carnitine (C) +0.6 -0.1 -0.0 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.1 +0.3 +0.4 +0.4 N.D.
stress Betaine (C)(N); with TAPS; with chloride +0.5 +0.3 +0.4 +0.1 N.D.
carbon source L-Valine (C) +0.3 +0.3 +0.5 +0.2 N.D.
pH Growth at pH9 and (C) Trisodium citrate +0.7 +0.3 +0.5 +0.4 N.D.
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