Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26840 and PFLU_RS26845 are separated by 110 nucleotidesPFLU_RS26845 and PFLU_RS26850 are separated by 77 nucleotidesPFLU_RS26850 and PFLU_RS26855 are separated by 19 nucleotidesPFLU_RS26855 and PFLU_RS26860 overlap by 4 nucleotides PFLU_RS26840: PFLU_RS26840 - hypothetical protein, at 5,991,361 to 5,992,248 _RS26840 PFLU_RS26845: PFLU_RS26845 - 1-deoxy-D-xylulose-5-phosphate synthase, at 5,992,359 to 5,994,257 _RS26845 PFLU_RS26850: PFLU_RS26850 - TonB-dependent receptor, at 5,994,335 to 5,996,230 _RS26850 PFLU_RS26855: PFLU_RS26855 - cobalamin-binding protein, at 5,996,250 to 5,997,038 _RS26855 PFLU_RS26860: PFLU_RS26860 - nuclear fragile X mental retardation-interacting protein 1, at 5,997,035 to 5,997,454 _RS26860
Group Condition PFLU_RS26840 PFLU_RS26845 PFLU_RS26850 PFLU_RS26855 PFLU_RS26860
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. -0.1 -1.3 -1.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. N.D. -0.2 -0.5 -1.0
stress Betaine (C)(N); with MOPS; with chloride N.D. N.D. -0.1 -0.7 -0.5
carbon source Phloretic Acid 2 mM (C) N.D. N.D. +0.2 -0.8 -0.5
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs N.D. N.D. -0.0 -0.1 -1.0
carbon source pyruvate 20 mM (C) N.D. N.D. -0.2 -0.5 -0.4
temperature Growth at 25C N.D. N.D. -0.0 -0.8 -0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. -0.2 -1.0 +0.2
carbon source caffeic 2 mM (C) N.D. N.D. +0.2 -0.4 -0.5
temperature shift Temperature shift 10_to_25; with MOPS N.D. N.D. +0.2 -0.5 -0.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. N.D. -0.4 -0.8 +0.5
carbon source Xanthosine (C) N.D. N.D. -0.2 -0.6 +0.5
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. N.D. -0.1 +0.5 -0.6
no stress control Glycine betaine (C)(N); with TAPS N.D. N.D. +0.3 -0.6 +0.2
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS N.D. N.D. +0.1 +0.5 -0.6
nitrogen source NAG (N); with MOPS N.D. N.D. -0.1 -0.7 +0.9
stress Betaine (C)(N); with MOPS; with chloride N.D. N.D. -0.0 -0.3 +0.7
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS N.D. N.D. -0.4 +0.6 +0.2
carbon source acetate 30 mM (C) N.D. N.D. -0.3 +0.6 +0.2
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. +0.2 +0.6 -0.3
carbon source NAG (C) N.D. N.D. +0.0 -0.2 +0.8
carbon source L-Valine (C) N.D. N.D. -0.3 +0.4 +0.8
stress Betaine (C)(N); with TAPS; with chloride N.D. N.D. -0.1 +0.7 +0.4
carbon source Sucrose 5 mM (C) N.D. N.D. +0.1 +0.5 +0.4
nitrogen source NAG (N) N.D. N.D. +0.2 +0.5 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride N.D. N.D. -0.5 +1.0 +0.6
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. +0.0 +0.3 +0.7
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride N.D. N.D. +0.1 +0.3 +0.7
pH Growth at pH9 and (C) Trisodium citrate N.D. N.D. +0.2 +0.6 +0.5
pH Growth at pH9 and (C) Trisodium citrate N.D. N.D. +0.2 +0.5 +0.8
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