Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26495 and PFLU_RS26500 are separated by 397 nucleotidesPFLU_RS26500 and PFLU_RS26505 are separated by 199 nucleotidesPFLU_RS26505 and PFLU_RS26510 overlap by 6 nucleotidesPFLU_RS26510 and PFLU_RS26515 are separated by 71 nucleotides PFLU_RS26495: PFLU_RS26495 - glycine zipper family protein, at 5,922,834 to 5,923,907 _RS26495 PFLU_RS26500: PFLU_RS26500 - Lrp/AsnC family transcriptional regulator, at 5,924,305 to 5,924,784 _RS26500 PFLU_RS26505: PFLU_RS26505 - DUF2788 domain-containing protein, at 5,924,984 to 5,925,193 _RS26505 PFLU_RS26510: PFLU_RS26510 - pseudouridine synthase, at 5,925,188 to 5,925,823 _RS26510 PFLU_RS26515: PFLU_RS26515 - AMP nucleosidase, at 5,925,895 to 5,927,358 _RS26515
Group Condition PFLU_RS26495 PFLU_RS26500 PFLU_RS26505 PFLU_RS26510 PFLU_RS26515
carbon source Phloretic Acid 2 mM (C) -0.5 -1.0 -2.4 +0.0 -1.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.4 -3.9 +0.2 -0.8
no stress control Glycine betaine (C)(N); with MOPS +0.0 -0.0 -1.0 -0.2 -3.5
no stress control Betaine (C)(N); with MOPS -0.2 -0.1 -0.8 -0.0 -3.4
no stress control Glycine betaine (C)(N); with MOPS -0.1 -0.1 -0.9 +0.1 -3.5
no stress control Betaine (C)(N); with TAPS -0.1 -0.5 -0.8 +0.0 -3.1
carbon source Inosine 10 mM (C) -0.1 -0.3 -1.6 -0.2 -2.3
stress Betaine (C)(N); with MOPS; with chloride -0.4 -0.1 -3.0 -0.5 -0.2
no stress control Glycine betaine (C)(N); with TAPS -0.2 +0.2 -1.8 -0.1 -2.4
carbon source p-Coumaric (C) 5 mM -0.1 +0.8 -4.1 +0.0 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.1 -0.2 -1.9 -0.2 -1.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -0.8 -2.2 +0.0 -0.5
carbon source L-Valine (C) -0.2 +0.9 -3.8 -0.0 -0.4
no stress control Glycine betaine (C)(N); with MOPS -0.0 +0.4 -0.4 -0.0 -3.4
no stress control Betaine (C)(N); with TAPS -0.0 +0.0 -0.3 +0.2 -3.2
no stress control Betaine (C)(N); with MOPS +0.2 -0.3 +0.4 -0.0 -3.4
no stress control Betaine (C)(N); with MOPS +0.0 +0.2 -0.0 +0.1 -3.4
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.1 -0.1 -2.2 +0.3 -1.0
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.2 -0.4 -1.4 +0.2 -1.4
no stress control Betaine (C)(N); with MOPS -0.0 +0.0 +0.3 +0.1 -3.3
no stress control Betaine (C)(N); with MOPS +0.1 -0.4 +0.7 +0.1 -3.2
no stress control Betaine (C)(N); with MOPS +0.2 +0.1 +0.3 -0.0 -3.3
no stress control Betaine (C)(N); with MOPS +0.0 +0.2 +0.5 -0.0 -3.0
no stress control Glycine betaine (C)(N); with MOPS -0.2 +0.3 +0.0 +0.5 -2.8
temperature Growth at 25C +0.1 +0.0 -2.1 -0.1 +1.4
carbon source Inosine (C) +0.1 +2.0 -2.8 -0.0 +0.2
carbon source NAG (C) -0.4 +1.1 -0.9 +0.4 +0.7
carbon source Inosine (C) -0.0 +2.3 -1.3 +0.2 +0.2
nitrogen source Ammonium chloride (N); with MOPS +0.1 -0.1 -1.1 -0.0 +2.9
nitrogen source NAG (N); with MOPS -0.2 +0.5 +0.5 -0.1 +2.7
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