Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26445 and PFLU_RS26450 are separated by 476 nucleotidesPFLU_RS26450 and PFLU_RS26455 are separated by 223 nucleotidesPFLU_RS26455 and PFLU_RS26460 are separated by 43 nucleotidesPFLU_RS26460 and PFLU_RS26465 are separated by 117 nucleotides PFLU_RS26445: PFLU_RS26445 - hypothetical protein, at 5,913,292 to 5,913,858 _RS26445 PFLU_RS26450: PFLU_RS26450 - DUF3077 domain-containing protein, at 5,914,335 to 5,914,634 _RS26450 PFLU_RS26455: PFLU_RS26455 - 3'-5' exonuclease, at 5,914,858 to 5,915,469 _RS26455 PFLU_RS26460: PFLU_RS26460 - NYN domain-containing protein, at 5,915,513 to 5,915,989 _RS26460 PFLU_RS26465: PFLU_RS26465 - DUF2076 domain-containing protein, at 5,916,107 to 5,916,853 _RS26465
Group Condition PFLU_RS26445 PFLU_RS26450 PFLU_RS26455 PFLU_RS26460 PFLU_RS26465
carbon source Ferulic Acid 2 mM (C) -0.2 -0.5 -1.3 -0.2 -0.1
nitrogen source Ammonium chloride (N); with MOPS -0.1 -0.3 -1.3 -0.4 -0.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.3 -0.8 -0.9 +0.2 +0.0
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.4 -0.9 -0.0 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 +0.3 -1.0 -0.7 -0.2
no stress control Glycine betaine (C)(N); with TAPS +0.1 -0.1 -1.1 +0.1 -0.5
carbon source Phloretic Acid 2 mM (C) -0.1 +0.1 -1.4 +0.2 +0.1
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 +0.3 -0.7 -0.9 +0.2
carbon source L-Valine (C) -0.0 -0.2 -1.2 +0.2 +0.3
carbon source p-Coumaric (C) 5 mM +0.1 -0.2 -1.2 +0.4 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 +0.5 -1.1 +0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.5 -0.5 -0.4 +0.1 -0.4
pH Growth at pH9 and (C) Trisodium citrate -0.1 -0.1 -1.0 +0.8 -0.2
no stress control L-Glutamine (C)(N); with MOPS +0.0 -1.0 +0.5 -0.0 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.1 -0.9 +0.3 +0.2 +0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -0.4 +0.3 +0.4 -0.4
carbon source L-Isoleucine (C) +0.2 -0.7 -0.2 +0.3 +0.4
carbon source 4-Aminobutyric (C) -0.1 +0.2 -0.8 +0.5 +0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.1 +0.1 -0.6 +0.4 +0.3
carbon source p-Coumaric (C) 5 mM -0.1 -0.5 +0.4 +0.6 -0.2
carbon source L-Carnitine (C) +0.3 +0.2 -0.3 +0.6 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 -0.9 +0.1 +0.2 +0.6
carbon source Quinic Acid (C) +0.1 +0.4 -0.5 +0.6 -0.2
carbon source NAG (C) +0.0 +0.3 -0.6 +0.6 +0.2
carbon source NAG (C) -0.1 -0.4 +0.3 +0.5 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.3 +0.4 -0.6 +0.3 +0.6
stress Betaine (C)(N); with TAPS; with chloride +0.2 -0.6 +0.7 +0.1 +0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.2 +0.6 -0.4 +0.4 +0.1
pH Growth at pH9 and (C) Trisodium citrate +0.3 -0.2 +0.2 +1.0 -0.0
carbon source 4-Guanidinobutyric (C) -0.0 +0.2 +0.5 +0.4 +0.7
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