Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26430 and PFLU_RS26435 are separated by 160 nucleotidesPFLU_RS26435 and PFLU_RS26440 are separated by 89 nucleotidesPFLU_RS26440 and PFLU_RS26445 overlap by 11 nucleotidesPFLU_RS26445 and PFLU_RS26450 are separated by 476 nucleotides PFLU_RS26430: PFLU_RS26430 - drug/metabolite exporter YedA, at 5,911,431 to 5,912,327 _RS26430 PFLU_RS26435: PFLU_RS26435 - Lrp/AsnC family transcriptional regulator, at 5,912,488 to 5,912,949 _RS26435 PFLU_RS26440: PFLU_RS26440 - acyl carrier protein, at 5,913,039 to 5,913,302 _RS26440 PFLU_RS26445: PFLU_RS26445 - hypothetical protein, at 5,913,292 to 5,913,858 _RS26445 PFLU_RS26450: PFLU_RS26450 - DUF3077 domain-containing protein, at 5,914,335 to 5,914,634 _RS26450
Group Condition PFLU_RS26430 PFLU_RS26435 PFLU_RS26440 PFLU_RS26445 PFLU_RS26450
stress Betaine (C)(N); with MOPS; with chloride -0.0 -0.2 -2.2 -0.2 -0.1
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 -0.1 -2.4 +0.3 -0.1
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.3 -1.7 -0.2 -0.1
carbon source acetate 30 mM (C) -0.1 -0.4 -1.3 -0.2 -0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.3 -0.2 -0.7 -0.1 -0.6
stress L-Glutamine (C)(N); with TAPS; with chloride -0.0 -0.3 -1.6 -0.1 +0.2
nitrogen source NAG (N); with MOPS -0.2 +0.2 -1.8 +0.1 -0.1
temperature Growth at 30C +0.1 -0.6 -1.0 -0.0 -0.3
no stress control L-Glutamine (C)(N); with MOPS -0.1 -0.3 -0.4 +0.0 -1.0
stress malate (C) and Ammonium chloride (N); with TAPS -0.1 +0.4 -1.8 +0.1 -0.3
no stress control Glucose (C) and nitrate (N); with MOPS -0.1 -0.4 -1.6 +0.0 +0.3
carbon source Phloretic Acid 2 mM (C) -0.0 +0.6 -1.9 -0.0 -0.2
carbon source Inosine 10 mM (C) +0.1 +0.1 -1.7 +0.1 +0.1
carbon source 4-Acetoxy-3-methoxycinnamic 2 mM (C) -0.0 +0.4 -0.5 -0.3 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 +0.3 -1.7 -0.1 +0.3
stress Betaine (C)(N); with MOPS; with chloride +0.1 -0.1 -1.1 +0.1 -0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.1 -0.2 -1.2 +0.1 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 -0.2 -1.2 -0.1 +0.5
carbon source D-Mannitol (C) -0.2 +0.2 -1.1 +0.2 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 +0.2 -0.2 +0.4 -0.9
carbon source p-Coumaric 2 mM (C) -0.2 -0.4 +1.0 -0.2 -0.0
carbon source L-Carnitine (C) +0.0 -0.5 +0.6 +0.3 +0.2
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.2 -0.2 +1.2 -0.2 +0.3
carbon source D,L-Malic Acid (C) +0.2 +0.3 +0.9 +0.2 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.0 +0.5 +0.5 -0.3 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.0 -0.3 +1.2 -0.0 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 +0.3 +0.8 +0.0 +0.4
carbon source 4-Guanidinobutyric (C) -0.2 +0.9 +0.5 -0.0 +0.2
carbon source Quinic Acid (C) -0.2 +0.3 +1.1 +0.1 +0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.3 +0.2 +0.9 +0.2 +0.6
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