Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26310 and PFLU_RS26315 overlap by 4 nucleotidesPFLU_RS26315 and PFLU_RS26320 are separated by 135 nucleotidesPFLU_RS26320 and PFLU_RS26325 overlap by 4 nucleotidesPFLU_RS26325 and PFLU_RS26330 overlap by 4 nucleotides PFLU_RS26310: PFLU_RS26310 - DUF2442 domain-containing protein, at 5,884,348 to 5,884,815 _RS26310 PFLU_RS26315: PFLU_RS26315 - DUF4160 domain-containing protein, at 5,884,812 to 5,885,240 _RS26315 PFLU_RS26320: PFLU_RS26320 - TolC family outer membrane protein, at 5,885,376 to 5,886,692 _RS26320 PFLU_RS26325: PFLU_RS26325 - HlyD family type I secretion periplasmic adaptor subunit, at 5,886,689 to 5,888,014 _RS26325 PFLU_RS26330: PFLU_RS26330 - type I secretion system permease/ATPase, at 5,888,011 to 5,889,747 _RS26330
Group Condition PFLU_RS26310 PFLU_RS26315 PFLU_RS26320 PFLU_RS26325 PFLU_RS26330
carbon source propionate 20 mM (C) -0.8 -0.5 -0.1 +0.3 -0.4
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.7 -0.2 +0.2 -0.2 -0.2
nitrogen source NAG (N); with MOPS -0.3 -0.7 -0.2 -0.1 +0.1
pH Growth at pH6 and (C) D-Glucose -0.3 -0.6 +0.2 +0.1 -0.2
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.5 -0.6 +0.3 +0.2 -0.3
carbon source L-Valine (C) -0.8 +0.1 +0.2 -0.0 -0.3
carbon source Phloretic Acid 2 mM (C) -1.0 -0.1 +0.0 +0.0 +0.3
pH Growth at pH8 and (C) Trisodium citrate -0.2 +0.4 -0.3 +0.0 -0.6
no stress control L-Glutamine (C)(N); with MOPS -0.0 -0.7 -0.2 +0.3 -0.1
pH Growth at pH9 and (C) D-Glucose -0.7 -0.2 +0.3 +0.2 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 +0.4 -0.1 -0.2 -0.0
carbon source p-Coumaric 2 mM (C) -0.5 +0.5 +0.1 -0.1 -0.5
carbon source L-Valine 10 mM (C) -0.1 +0.2 -0.4 +0.2 -0.5
carbon source L-Valine (C) +0.2 -0.8 +0.1 +0.1 +0.2
carbon source 4-Hydroxybenzoic Acid 2 mM (C) -0.6 +0.5 +0.0 +0.1 -0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 +0.2 +0.3 +0.1 +0.0
stress Betaine (C)(N); with MOPS; with chloride -0.4 +0.4 +0.3 +0.1 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 +0.2 -0.0 -0.0 +0.6
stress Betaine (C)(N); with TAPS; with chloride +0.6 -0.3 +0.2 +0.1 -0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS +0.3 +0.3 -0.2 -0.1 +0.3
stress Betaine (C)(N); with TAPS; with chloride +0.4 -0.1 -0.2 +0.2 +0.4
stress Betaine (C)(N); with TAPS; with chloride +0.5 -0.5 +0.1 +0.3 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride +0.7 -0.4 +0.3 +0.0 +0.1
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS +0.5 -0.2 -0.3 +0.2 +0.4
carbon source D,L-Malic Acid (C) +0.5 -0.4 +0.0 +0.1 +0.5
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 +0.2 +0.1 +0.5 +0.3
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 +0.3 +0.2 -0.2 +0.2
carbon source 4-Guanidinobutyric (C) +0.6 -0.2 +0.2 +0.2 +0.3
carbon source Choline chloride 10 mM (C) +0.3 +0.3 -0.2 +0.2 +0.4
carbon source p-Coumaric (C) 5 mM +0.5 +0.1 -0.1 +0.3 +0.3
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