Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS26075 and PFLU_RS26080 overlap by 58 nucleotidesPFLU_RS26080 and PFLU_RS26085 are separated by 50 nucleotidesPFLU_RS26085 and PFLU_RS26090 are separated by 164 nucleotidesPFLU_RS26090 and PFLU_RS26095 are separated by 361 nucleotides PFLU_RS26075: PFLU_RS26075 - IS66 family insertion sequence hypothetical protein, at 5,825,461 to 5,825,802 _RS26075 PFLU_RS26080: PFLU_RS26080 - IS66 family insertion sequence element accessory protein TnpB, at 5,825,745 to 5,826,134 _RS26080 PFLU_RS26085: PFLU_RS26085 - IS66 family transposase, at 5,826,185 to 5,827,711 _RS26085 PFLU_RS26090: PFLU_RS26090 - methyl-accepting chemotaxis protein, at 5,827,876 to 5,829,837 _RS26090 PFLU_RS26095: PFLU_RS26095 - hypothetical protein, at 5,830,199 to 5,830,453 _RS26095
Group Condition PFLU_RS26075 PFLU_RS26080 PFLU_RS26085 PFLU_RS26090 PFLU_RS26095
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -2.5 -0.3 +0.1 +0.4 -1.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 +0.1 +0.2 -1.3 -1.4
carbon source Choline chloride 10 mM (C) -0.6 -0.9 -0.0 -0.3 -1.2
nitrogen source nitrate (N); with MOPS -0.9 -0.4 -0.1 -0.4 -1.0
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 -0.5 +0.2 -0.7 -1.0
carbon source p-Coumaric 2 mM (C) -0.4 -0.3 -0.3 -1.6 +0.0
carbon source D-(+)-Galactosamine 10 mM (C) -1.0 -0.7 +0.0 -0.6 -0.2
carbon source 4-Guanidinobutyric (C) -0.5 -0.7 -0.2 -1.1 +0.1
pH Growth at pH9 and (C) Trisodium citrate -0.7 -0.2 +0.2 -0.7 -0.9
carbon source D-Glucosamine Hydrochloride 10 mM (C) +0.6 -0.8 -0.3 -1.3 -0.3
nitrogen source nitrate (N); with MOPS -0.5 +0.2 -0.1 -1.8 +0.3
carbon source Inosine (C) -0.8 -1.1 -0.5 +0.3 +0.2
carbon source Betaine 10 mM (C) -1.2 -0.3 -0.3 +0.5 -0.2
nitrogen source NAG (N); with MOPS -0.0 +0.5 -0.2 -1.4 -0.4
carbon source Xanthosine (C) +0.8 +0.1 +0.0 -2.0 -0.4
carbon source L-Valine 10 mM (C) -1.1 -0.3 -0.2 +0.6 -0.3
carbon source NAG (C) +0.2 +0.5 -0.3 -1.6 +0.1
carbon source D,L-Malic Acid (C) -0.8 +0.8 +0.2 -0.5 -0.5
stress L-Glutamine (C)(N); with TAPS; with chloride +0.5 +0.5 +0.1 -1.3 -0.4
pH Growth at pH7 and (C) D-Glucose -1.0 -0.7 +0.1 +0.8 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.6 +0.6 +0.4 +0.5 -1.4
carbon source L-Carnitine (C) -1.4 +0.5 +0.5 +0.1 -0.0
carbon source L-Ornithine 10 mM (C) -1.0 +0.3 -0.2 +0.9 -0.3
stress Betaine (C)(N); with MOPS; with chloride +0.1 +0.7 +0.2 -1.5 +0.1
carbon source p-Coumaric (C) 5 mM +1.1 +0.4 -0.2 -1.1 -0.4
pH Growth at pH8 and (C) Trisodium citrate -1.3 +0.5 +0.1 +0.1 +0.5
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.6 -0.3 -0.4 +0.8 +0.4
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.8 +0.6 -0.1 -0.6 -0.4
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 +0.6 -0.1 +1.0 +0.1
carbon source L-Carnitine (C) +0.7 +0.4 +0.2 +0.7 -0.5
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