Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS25000 and PFLU_RS25005 are separated by 9 nucleotidesPFLU_RS25005 and PFLU_RS25010 are separated by 238 nucleotidesPFLU_RS25010 and PFLU_RS25015 are separated by 108 nucleotidesPFLU_RS25015 and PFLU_RS25020 are separated by 30 nucleotides PFLU_RS25000: PFLU_RS25000 - response regulator, at 5,597,952 to 5,598,320 _RS25000 PFLU_RS25005: PFLU_RS25005 - methyl-accepting chemotaxis protein, at 5,598,330 to 5,599,541 _RS25005 PFLU_RS25010: PFLU_RS25010 - cupin domain-containing protein, at 5,599,780 to 5,600,160 _RS25010 PFLU_RS25015: PFLU_RS25015 - hypothetical protein, at 5,600,269 to 5,600,553 _RS25015 PFLU_RS25020: PFLU_RS25020 - hypothetical protein, at 5,600,584 to 5,601,480 _RS25020
Group Condition PFLU_RS25000 PFLU_RS25005 PFLU_RS25010 PFLU_RS25015 PFLU_RS25020
carbon source propionate 20 mM (C) -0.9 -0.0 -0.4 -1.0 +0.0
carbon source Ferulic Acid (C) 1.5 mM -0.6 -0.5 -0.5 -0.1 -0.2
carbon source Guanosine 10 mM (C) -0.6 -0.1 -0.5 -0.7 +0.0
carbon source L-Lysine (C) -0.5 -0.4 -0.9 -0.0 +0.1
temperature shift Temperature shift 10_to_25; with MOPS -0.6 +0.1 -0.1 -0.9 -0.1
carbon source Xanthosine (C) -0.1 -0.8 -0.8 -0.2 +0.3
temperature Growth at 25C -0.2 -0.6 +0.1 -0.8 -0.1
carbon source Phloretic Acid 2 mM (C) -1.7 -0.3 +0.2 +0.2 +0.1
stress D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride -0.2 -0.4 -1.1 -0.0 +0.2
stress Betaine (C)(N); with TAPS; with chloride -0.4 -0.1 +0.6 -1.2 -0.2
no stress control Glycine betaine (C)(N); with MOPS -0.3 +0.2 -1.2 +0.2 -0.3
carbon source Inosine (C) +1.0 -0.4 -0.1 -1.6 -0.2
carbon source D,L-Malic Acid (C) -0.7 +0.4 -0.4 -0.6 +0.1
no stress control D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS -0.9 -0.2 +0.3 -0.1 -0.3
stress Betaine (C)(N); with MOPS; with chloride -1.0 -0.3 +0.6 -0.1 -0.3
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.9 -0.4 +0.1 +0.3 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 +0.6 -0.3 -0.3 -0.3
carbon source L-Carnitine (C) -0.1 -0.4 -1.0 +0.7 +0.2
pH Growth at pH9 and (C) Trisodium citrate -0.1 -0.5 +0.4 -0.6 +0.3
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride -0.3 -0.3 -0.4 +0.9 -0.4
carbon source Quinic Acid (C) +0.8 -0.6 -0.2 -0.1 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.0 -0.5 -0.7 +0.3 +0.6
stress L-Glutamine (C)(N); with TAPS; with chloride +0.6 +0.3 -0.3 -0.6 -0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -0.1 +0.5 +0.3 +0.2
carbon source L-Carnitine (C) +0.7 -0.5 +0.3 -0.6 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 +0.1 +0.6 -0.0 +0.3
carbon source m-Inositol (C) +0.5 +0.1 +0.1 -0.8 +0.4
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.7 +0.2 +0.0 +1.0 +0.1
carbon source 4-Guanidinobutyric (C) -0.1 +0.3 +0.7 -0.4 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +0.4 +1.0 -0.8 +0.1
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