Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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Top 30 experiments (either direction), sorted by average fitness

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500 ntPFLU_RS24530 and PFLU_RS24535 are separated by 170 nucleotidesPFLU_RS24535 and PFLU_RS24540 are separated by 317 nucleotidesPFLU_RS24540 and PFLU_RS24545 are separated by 87 nucleotidesPFLU_RS24545 and PFLU_RS24550 are separated by 67 nucleotides PFLU_RS24530: PFLU_RS24530 - TIGR02285 family protein, at 5,497,199 to 5,498,071 _RS24530 PFLU_RS24535: PFLU_RS24535 - DUF3509 domain-containing protein, at 5,498,242 to 5,498,526 _RS24535 PFLU_RS24540: PFLU_RS24540 - hypothetical protein, at 5,498,844 to 5,499,044 _RS24540 PFLU_RS24545: PFLU_RS24545 - threonine synthase, at 5,499,132 to 5,500,541 _RS24545 PFLU_RS24550: PFLU_RS24550 - homoserine dehydrogenase, at 5,500,609 to 5,501,913 _RS24550
Group Condition PFLU_RS24530 PFLU_RS24535 PFLU_RS24540 PFLU_RS24545 PFLU_RS24550
no stress control p-Coumaric (C) and Ammonium chloride (N); with MOPS -0.2 -3.9 +0.1 N.D. N.D.
stress Betaine (C)(N); with MOPS; with chloride +0.1 -4.0 +0.2 N.D. N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.3 -3.3 +0.1 N.D. N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.2 -3.9 +0.3 N.D. N.D.
no stress control L-Glutamine (C)(N); with TAPS -0.1 -3.3 +0.2 N.D. N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride -0.0 -2.5 -0.3 N.D. N.D.
no stress control Betaine (C)(N); with TAPS +0.1 -2.7 +0.0 N.D. N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.0 -2.5 +0.2 N.D. N.D.
no stress control Glucose (C) and L-Glutamine (N); with MOPS -0.1 -2.0 +0.1 N.D. N.D.
no stress control Growth with no stress; with MOPS +0.3 -2.4 +0.0 N.D. N.D.
carbon source D-Galactose (C) +0.0 -2.0 +0.0 N.D. N.D.
carbon source Phloretic Acid 2 mM (C) +0.3 -2.2 -0.0 N.D. N.D.
carbon source L-Isoleucine (C) +0.0 -2.1 +0.3 N.D. N.D.
carbon source D-Mannitol (C) +0.2 -2.0 +0.0 N.D. N.D.
carbon source L-Ornithine 10 mM (C) -0.0 -1.7 -0.1 N.D. N.D.
carbon source Phloretic Acid 2 mM (C) +0.3 -2.1 +0.1 N.D. N.D.
carbon source propionate 20 mM (C) +0.1 -2.2 +0.5 N.D. N.D.
temperature shift Temperature shift 10_to_25; with MOPS -0.0 -1.7 +0.1 N.D. N.D.
stress Growth with Chloride 200 mM; with MOPS -0.2 -1.8 +0.3 N.D. N.D.
carbon source Phloretic Acid 2 mM (C) +0.2 -1.6 -0.2 N.D. N.D.
carbon source m-Inositol (C) +0.1 -1.3 -0.4 N.D. N.D.
temperature Growth at 30C -0.1 -1.6 +0.3 N.D. N.D.
carbon source D-(+)-Galactosamine (C) -0.2 -1.4 +0.3 N.D. N.D.
no stress control Glycine betaine (C)(N); with TAPS +0.3 -1.7 +0.2 N.D. N.D.
stress D,L-Malic Acid (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -1.5 +0.0 N.D. N.D.
carbon source D,L-Malic Acid (C) +0.0 -1.6 +0.4 N.D. N.D.
carbon source L-Valine 10 mM (C) +0.2 -1.6 +0.3 N.D. N.D.
carbon source Shikimic Acid (C) -0.7 +0.9 +0.6 N.D. N.D.
carbon source L-Carnitine (C) -0.1 +2.0 -0.1 N.D. N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 +1.9 +0.4 N.D. N.D.
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