Fitness for 5 genes in Pseudomonas fluorescens SBW25-INTG

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500 ntPFLU_RS24425 and PFLU_RS24430 overlap by 11 nucleotidesPFLU_RS24430 and PFLU_RS24435 are separated by 200 nucleotidesPFLU_RS24435 and PFLU_RS24440 are separated by 50 nucleotidesPFLU_RS24440 and PFLU_RS24445 are separated by 102 nucleotides PFLU_RS24425: PFLU_RS24425 - HAMP domain-containing histidine kinase, at 5,472,607 to 5,473,887 _RS24425 PFLU_RS24430: PFLU_RS24430 - response regulator transcription factor, at 5,473,877 to 5,474,560 _RS24430 PFLU_RS24435: PFLU_RS24435 - LTA synthase family protein, at 5,474,761 to 5,476,710 _RS24435 PFLU_RS24440: PFLU_RS24440 - phosphatase PAP2 family protein, at 5,476,761 to 5,477,498 _RS24440 PFLU_RS24445: PFLU_RS24445 - chaperonin GroEL, at 5,477,601 to 5,479,247 _RS24445
Group Condition PFLU_RS24425 PFLU_RS24430 PFLU_RS24435 PFLU_RS24440 PFLU_RS24445
carbon source Shikimic Acid 10 mM (C) -1.3 -1.1 +0.1 +0.0 N.D.
carbon source Shikimic Acid 10 mM (C) -1.0 -1.3 +0.1 -0.0 N.D.
carbon source Shikimic Acid (C) -0.3 -1.1 -0.1 -0.5 N.D.
carbon source Shikimic Acid 10 mM (C) -0.8 -1.0 +0.1 -0.1 N.D.
temperature shift Temperature shift 30_to_34 -0.6 -0.8 +0.1 -0.3 N.D.
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -1.0 -0.2 -0.1 -0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 +0.1 +0.0 -1.3 N.D.
temperature shift Temperature shift 30_to_34 -0.4 -0.8 +0.1 -0.2 N.D.
no stress control Glucose (C) and Ammonium chloride (N); with TAPS -0.3 -1.2 +0.2 -0.0 N.D.
no stress control Glucose (C) and Ammonium chloride (N); with TAPS -0.4 -1.0 +0.1 +0.1 N.D.
no stress control Ferulic (C) and Ammonium chloride (N); with MOPS -0.7 +0.1 -0.1 -0.4 N.D.
temperature shift Temperature shift 10_to_21 -0.3 -0.9 +0.1 -0.1 N.D.
stress Growth with Chloride 200 mM -0.3 -0.9 +0.1 -0.1 N.D.
stress Betaine (C)(N); with TAPS; with chloride -0.1 -0.9 -0.1 +0.2 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.3 -0.1 -0.3 -0.7 N.D.
carbon source Shikimic Acid (C) -0.6 -0.4 +0.2 -0.0 N.D.
carbon and nitrogen source NAG carbon and (N) +0.3 -0.4 +0.0 -0.5 N.D.
stress Glucose (C) and Ammonium chloride (N); with MOPS; with chloride +0.1 -1.0 +0.0 +0.3 N.D.
no stress control Glycine betaine (C)(N); with TAPS +0.1 +0.7 -0.0 -1.3 N.D.
no stress control p-Coumaric (C) and Ammonium chloride (N); with TAPS -0.1 -0.8 -0.1 +0.6 N.D.
stress p-Coumaric (C) and Ammonium chloride (N); with TAPS +0.3 -0.8 +0.1 +0.3 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.1 +0.6 +0.0 -0.6 N.D.
carbon source Xanthosine (C) -0.4 +0.6 -0.2 +0.1 N.D.
carbon source 4-Aminobutyric (C) +0.1 +0.6 +0.2 -0.4 N.D.
stress Betaine (C)(N); with TAPS; with chloride +0.6 -0.3 +0.1 +0.3 N.D.
carbon source L-Carnitine (C) -0.3 +0.7 +0.1 +0.1 N.D.
carbon source p-Coumaric (C) 5 mM +0.3 +0.7 -0.1 -0.1 N.D.
carbon and nitrogen source NAG carbon and (N) +0.6 +0.6 +0.0 -0.0 N.D.
carbon source p-Coumaric (C) 5 mM +0.5 +0.9 +0.0 -0.0 N.D.
carbon source p-Coumaric (C) 5 mM +0.6 +1.0 -0.1 +0.1 N.D.
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